2012 º Ø 1= emercury.yukawa.kyoto-u.ac.jp/~bussei.kenkyu/pdf/02/2/...2.1.2 4ß(ò$Î#Õ q ö b 6...

40
2012 ᖺᗘ ಟኈㄽ 㟁Ꮚ㟁Ꮚ㔜ඹ㬆ἲ⏝ ࡓ࠸㓟⣲Ⓨ⏕⣔ S 2 ≧ែ Mn ࢱࢫ☢Ẽᵓ㐀ᒇᏛ⌮Ꮫ◊✲⛉ ≀㉁⌮Ꮫᑓᨷ≀⌮⣔ ග⏕య◊✲ᐊ㸦G ◊㸧 ὸ⏣⍞ᯞ Ꮫ⡠␒ 261102010 物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号) 《修士論文》

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Page 1: 2012 º Ø 1= emercury.yukawa.kyoto-u.ac.jp/~bussei.kenkyu/pdf/02/2/...2.1.2 4ß(ò$Î#Õ q ö b 6 T. vulcanus #ä bPS II ..... 14 2.1.3 S 1 "g  100% µ tPS II ..... 15 2.1.4 S 2

2012

S2 Mn

G

261102010

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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2

II PS II Mn

Mn 4 Mn 5 O 1 Ca

Mn 5 S0, S1, S2,

S3, S4 S1 X S2

Mn III, IV, IV, IV

ENDOR Mn

PELDOR

ESR Mn S2

S2 Mn PS II YD• PELDOR

PELDOR YD•-S2 Mn

R = 27 Å YD•-Mn YD

30 Å YD• Mn

spin projection PELDOR

PSII PELDOR

spin projection

Mn S2

4 Mn Mn1, 2, 3, 4 Spin projection [1.97, -1.20,

1.19, -0.96] Mn [III, IV, IV, IV]

spin projection Mn1-3 J13

Mn

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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3

1

1.1 ..................................................................................................................................... 4

1.2 II .............................................................................................................................. 5

1.3 Mn ....................................................................................................................... 7

1.4 Mn ........................................................................................... 8

1.5 Mn S2 ...................................................................................................... 8

1.6 Spin projection ......................................................................................................................... 9

1.7 Mn S2 ......................................................... 10

1.8 ....................................................................................................................... 12

2

2.1 ....................................................................................................................................... 13

2.1.1 PS II ........................................... 13

2.1.2 T. vulcanus PS II ................................................... 14

2.1.3 S1 100% PS II .................................................................................... 15

2.1.4 S2 PS II .................................................................................. 16

2.1.5 PS II ....................................................................................................... 17

2.2 ............................................................................................................................... 18

2.2.1 ESR ......................................................................................... 18

2.2.2 ESR ............................................................................................................... 21

2.2.3 PELDOR ................................................................. 22

2.3 PELDOR ................................................................................................... 23

3

3.1 ESR ................................................................................................... 25

3.1.1 S2 Mn ESE ................................................ 25

3.1.2 YD• CW-ESR ........................................................................ 26

3.2 PS II S2 Mn -YD• PELDOR ........................................ 27

3.3 PSII S2 Mn -YD• PELDOR ............................................. 32

4 .............................................................................................................................................. 36

5 .......................................................................................................................................... 37

6 ...................................................................................................................................... 38

7 .............................................................................................................................................. 40

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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4

1 1.1

ATP

2

NADPH

4 1-1 4

II PS II I PS I b6f ATP

PS I PS II

PSII

PS II P680 P680

PS II

QB QB 2 [McEvoy and

Brudvig 2006; Nelson and Yocum 2006; Messinger and Renger 2008] 1.2

b6f PC PS I

P700 P700 P680

1-1

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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5

PS I FD

-NADP FNR NADP+

NADPH NADPH

ATP

2 ADP 3 ATP ATP

NADPH

1.2 II

PSII PS II D1/D2

CP43/47 1-2 PS II

LHC(Light harvesting complex)II CP43/47

LHC II P680 D1/D2 C2

2

PSII

PS II PsbO, PsbU, PsbV PS II

PsbO, PsbP, PsbQ [McEvoy and Brudvig 2006; Nelson and Yocum 2006;

Messinger and Renger 2008]

1-2 T. vulcanus PS II

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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6

D1/D2 D/Z YD/YZ P680

2 a Chl a Pheo QA/QB

Fe

P680 D1

D2 QA QB P680

D1 YZ

YZ Mn Mn

D1/D2

D2 D1 YZ YD

YD Mn

Mn

1-3 PS II

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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7

1.3 Mn

Mn Mn

(Oxygen evolving complex)

1-4 X 1.9 Å

[Umena et al. 2011] Mn 4 Mn Ca Cl

PS II Mn Ca Cl

4 Mn Mn1 Mn2 Mn3 Mn4 Ca

Mn1 His332 D342 E189 Mn2

D342 A344 D2-E354 Mn3 E333 D2-E354 Mn4 E333 D170

1-4 X PS II

[Umena et al. 2011]

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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8

1.4 Mn

Mn 5 S0-4 [Kok et al. 1970]

1-5 S0 1 Mn 1

S3 Mn

S4 S0 2 1

S1 S4

S0

1.5 Mn S2

S2 Mn 1 III 3 IV Mn

1-5 III IV Mn S = 2, 3/2

Mn Mn

ST = 1/2 ESR

S2 Mn ESR g = 2

[Dismukes and Siderer 1981]

1-5 Mn

S 4 Mn

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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9

1.6 Spin projection

Mn

i Mn (ZFS)

g a i j

ZFS 1

i ZFS

3

1-6 Spin projection ST Si

i Mn Spin projection ST Siprojection

Si ST >90

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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10

1.7 Mn S2

ESR Mn

S2 Mn Mn J

Mn X-, Q- 55Mn-Pulsed ENDOR

Mn(III) -165 ~ -225 MHz Mn(IV) -187 ~ -253MHz

[Peloquin et al. 2000; Charlot et al. 2005; Kulik et al. 2005; Cox et al. 2011] Mn

spin projection 1

1 Pulsed ENDOR Mn spin projection

Mn(III) Mn(IV) Mn(IV) Mn(IV)

1.70 1.27 -1.0 -0.99 [Peloquin et al. 2000]

1.73 1.10 -1.04 -0.79 [Kulik et al. 2005]

1.73 1.12 -0.95 -0.90 [Cox et al. 2011] a1.39 ~ 1.89 a 0.99 ~ 1.34 a -1.11 ~ -0.82 a -1.02~ -0.75 [Cox et al. 2011] a Mn(III) Mn(IV) Aiso 165 ~ 225 187 ~ 253 MHz

Mn J

1-7 Peloquin Mn S2 4

[Peloquin et al. 2000] Peloquin 4 Mn

Kulik 3 Mn MnB(IV), MnC(III), MnD(IV)

MnB MnA Y [Kulik et al. 2005] Siegbahn

EXAFS Mn MnB(IV) 4

Mn [Pantazis et al. 2009] Cox Q 55Mn-ENDOR DFT Siegbahn [Siegbahn 2008;

Siegbahn 2009; Siegbahn 2009; Cox et al. 2011]

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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11

ESEEM ENDOR

ESEEM Mn(III) 14N

[Yeagle et al. 2008; Stich et al. 2011] X

Mn N His332

Glu Mn(III) His332

1-7 S2 Mn

1) Peloquin 2) Kulik DFT

3) Pantazis EXAFS

4) Siegbahn Pantazis DFT

[cm-1]

1-3 MnA-B 4 2-4 MnC-D

3 4 MnA

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12

PELDOR

2.2.4 S2 Mn YD PELDOR

27 Å [Hara et al. 1996] 1-8

X YD Mn 29 - 32 Å

PELDOR Mn 4 Mn

Spin projection

1.8

Mn S2 Mn Spin

projection YD-S2 Mn

PELDOR Mn S2 X

Mn Spin projection Mn

1-8 YD-S2 Mn PELDOR

27 Å 30 Å

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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13

2 2.1

2.1.1 PS II

BBY PS II

[Ono and Inoue 1986; Banham et al. 2008] 0

PSII

(1) A

0.4 M sucrose, 15 mM NaCl, 2 mM EDTA, 40 mM Hepes/NaOH (pH=7.5), 3 %BSA

(2) B

0.4 M sucrose, 15 mM NaCl, 5 mM MgCl, 40 mM Mes/NaOH (pH=6.5)

(3) C

0.4 M sucrose, 15 mM NaCl, 40 mM Mes/NaOH (pH=6.5), 30 % ethylene glycol

A

5,500 ×g R9A 7,000 rpm 25

B

100 ×g R20A2 1,000 rpm 4

30,000 ×g R20A2 17,000 rpm 5

B [Chl] = 5 mgChl/ml

[Chl] = 3 mgChl/ml 6.3 % Triton-X B

20

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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14

32,600 ×g R20A2 18,000 rpm 25

B

7,300 ×g R20A2 8,500 rpm 15

32,600 ×g R20A2 18,000 rpm 25

B

32,600 ×g R20A2 18,000 rpm 25

PSII

C 5 mgChl/ml

2.1.2 T. vulcanus PS II

T. vulcanus PS II [Shen and Inoue 1993;

Shen and Kamiya 2000] T. vulcanus PS II

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15

2.1.3 S1 100% PS II

PS II Mn

S1 PS II 273

S0-S3 25% PS II

S0 S2 S3 S1 S0:S1 25:75 S0

YD• S1 S0YD

• S1YD [Styring and Rutherford

1987]

S1 100 PS II

S1 100% PS II

D

0.4 M Sucrose, 20 mM NaCl, 1 mM EDTA, 50 mM Mes/NaOH (pH = 6.5)

BBY PS II

D buffer [Chl] = 1 mgChl/ml

273 K 1 2

S1 100% PS II

32,600 ×g R20A2 18,000 rpm 20

ESR

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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16

2.1.4 S2 PS II

200 K S2 S1 250 K

QA QB S2 S3

200 K S2 PS II

ESR PS II

200 K

S1 100% PS II 200 K

LED 150 μmol m-2 s-1

5

ESR

2-1 ESR

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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17

2.1.5 PS II

BBY PS II

PS II

PS II

PS II OHP

4 15

OHP 2.5 mm 25 mm 6

ESR

S1 S2 PS II

2-2

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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18

2.2

2.2.1 ESR

ESR

1 μ

(6)

g

(7)

e

2 , 2

(8)

α, β

2 Zeeman

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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19

2-3

ESR 2-3

CW-ESR

1 1

H

g

Zeeman Zeeman

2

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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20

R

A B

C, D

E, F

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21

2.2.2 ESR

CW-ESR

ESR tp

ns

2-4 z

(a)

x tp z y

xy (b) xy xy

(c) 90° τ tp 180°

yz xy (d)

τ y (e)

2-4 ESE

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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22

2.2.3 PELDOR

PELDOR 2

2 1,2

15 A, B

1, 2 1, 2 g 2

H

2-5 PELDOR ν1,2 1,2

1 ν1 90° (1st) 180°

(3rd) ν2 180° (2nd) 2

1 2 1st

2nd T 1 ESE

p 2nd

2-5 PELDOR

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23

2.3 PELDOR

PS II YD•-Mn YD

6 C O Mn 4 Mn

spin projection

1 YD•-Mn DT 17

YD• i (i = 1-7) Mn j (j = 1-4)

spin projection YD•-Mn

D

PELDOR 18

PS II C2 z

PS II PELDOR

Gauss PS II

H 0 90

2-6 PS II

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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24

X 1.9 Å

PELDOR [Umena et al. 2011] YZ YD

Fe PS II C2 Tyr

ENDOR 2-7 4 Mn spin projection 1

[Mino et al. 1997; Nagai et al. 2008; Kessen et al. 2010]

2-7 YD•

[Nagai et al. 2008]

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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25

3 3.1 ESR

3.1.1 S2 Mn ESE

3-1 T. vulcanus PS II A S2 B S1 ESE

g = 2 60 mT ST = 1/2 S2 Mn

S2 YD•

YD• PS II

T. vulcanus

PELDOR S2

YD•

3-1 T. vulcanus PS II ESE

(A)S2 (B)S1

9.60 GHz

τ 200 ns

2 ms

5 K

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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26

3.1.2 YD• CW-ESR

3-2 YD• g = 2 CW-ESR

T. vulcanus PS II S1 S2 S2 340 mT

3 mT ChlZ+ ChlZ

+ S2

ChlZ+ 338.5 mT

ChlZ+ PS II 8% T. vulcanus PS II 15%

ChlZ Mn YD ChlZ-S2 Mn

PELDOR YD ChlZ+

PELDOR

3-2 YD

• CW-ESR

9.592 GHz

50.5 μW

4 G

170 K

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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27

3.2 PS II S2 Mn -YD• PELDOR

3-3 PS II S2 Mn -YD• PELDOR

T. vulcanus A B PS II

PS II A,

B PS II T. vulcanus

3.2.1

PELDOR S2 Mn -YD• 27 Å

X Mn-YD• YD

Mn1-4 29.1 31.9 31.1 30.1 Å 3-3

27 C 30 Å D Mn-YD•

Mn 4 Mn Spin

projection

YD• Mn

3-3 S2 Mn - YD•

(A)T. vulcanus (B) PELDOR

(C)27 Å (D)30 Å

ν1 = 9.61 GHz ν2 = 9.73 GHz τ = 1000 ns

348 mT 2 ms 5 K

物性研究・電子版 Vol, 2, No. 2, 022601 (2013年5月号)《修士論文》

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28

3.2.2

YD• S2 Mn 4 Mn

S2 Mn spin projection ENDOR DFT

1.7 Mn spin projection Mn

spin projection Peloquin Mn spin projection

1.7, 1.27, -1, -0.99 [Peloquin et al. 2000] -1 -0.99 -1

Mn spin projection 12

Peloquin spin projection 3-4 Mn

spin projection 2

3-3 A b2 c2 d2 Mn1

spin projection 1.7 a1-3 Mn4 1.7 Mn1 1.27

d1 spin

projection

2 3-4 Mn spin projection

Mn1 Mn2 Mn3 Mn4

a1 1.7 1.27 -1 -1

a2 1.7 -1 1.27 -1

a3 1.7 -1 -1 1.27

b1 1.27 1.7 -1 -1

b2 -1 1.7 1.27 -1

b3 -1 1.7 -1 1.27

c1 1.27 -1 1.7 -1

c2 -1 1.27 1.7 -1

c3 -1 -1 1.7 1.27

d1 1.27 -1 -1 1.7

d2 -1 1.27 -1 1.7

d3 -1 -1 1.27 1.7

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3-4 S2 Mn - YD• PELDOR

Mn Spin projection 1.7 1.27 -1.0 -1 [Peloquin et al. 2000]

Spin projection 1.7 Mn(III) a1-3 Mn1 b1-3 Mn2 c1-3 Mn3

d1-3 Mn4 2 Spin projection 1.27 Mn a1-3

Mn2-4 b1-3 Mn1,3,4 c1-3 Mn1,2,4 d1-3 Mn1-3

3-2 τʹ = 440, 800 ns

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Mn(III) Mn(IV) Aiso 165 ~

225 187 ~ 253 MHz Cox Mn spin projection

[1.39 ~ 1.89, 0.99 ~ 1.34, -1.11 ~ -0.82, -1.02 ~ -0.75] [Cox et al.

2011] 1 10% [1.2 ~ 2.0, 0.9 ~ 1.5, -1.2 ~ -0.65, -1.2 ~

-0.65] Mn spin projection 12 4

spin projection 1.00 0.01

3-5 B, C, D τʹ = 200, 440, 800 ns

3-4 a2 a3 d1 5% 3

spin projection [++] spin projection [+]

spin projection [-] 3-5 B, C, D Mn spin projection

Mn1, 2, 3, 4 = [++, -, +, -], [++, -, -, +], [+, -, -, ++]

3-5 spin projection

Mn1 spin projection Mn2 Mn3 4

Mn1-2 Mn3-4

3 spin projection

Mn1 Mn2 Mn3 Mn4 Combinations Error range

1.68 ~ 2.00 -1.20 ~- 0.65 0.90 ~1.50 -1.20 ~ -0.65 [++, -, +, -] < 5%

1.20 ~ 1.71 -1.09 ~ -0.65 -1.20 ~ -0.65 0.90 ~ 1.50 [++, -, -, +] < 5%

0.90 ~ 1.50 -1.19 ~- 0.65 -1.20 ~ -0.65 1.20 ~ 2.00 [+, -, -, ++] < 5%

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3-5 PELDOR

A: 3-3 A B-D:

Mn Mn1-4 spin projection

B: 1.77, -1.07, 1.09, -0.75

C: 1.39, -0.75, -1.05, 1.01

D: 1.17, -0.77, -0.77, 1.39

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3.3 PSII S2 Mn -YD• PELDOR

3.2 Mn spin projection Mn

spin projection [++, -, +, -], [++, -, -, +], [+, -, -, ++]

3 PS II

PELDOR

3-6 PS II Cytb559 Cytb559 gZ

n H0 θ = 90° Gauss

Δ = 17 ± 0.5°

3-6 Cytb559 CW-ESR

Cytb559 gZ CW-ESR

9.44 GHz

201 μW

5 K

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3-7 PS II θ = 0° A θ = 90° B YD•-Mn PELDOR

θ = 0° R H0 1

1 θ = 0° τʹ = 220 620 ns θ = 90°

τʹ = 180 580 ns θ = 90° τʹ = 300 ns θ = 0°

τʹ = 430 810 ns θ = 90°

θ = 0° τʹ = 220 430 810 ns θ = 90° τʹ = 180 430 810 ns

3-7 A B Mn1

Mn3 spin projection [++, -, +, -]

Mn1-4 spin projection [1.97, -1.20, 1.19, -0.96]

3-7 S2 Mn - YD• PELDOR

A: H0 n θ = 0° B: θ = 90°

[++, -, +, -] [++, -, -, +] [+, -, -, ++]

ν1 = 9.61 GHz ν2 = 9.73 GHz τ = 1000 ns

348 mT 2 ms 5 K

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34

spin projection 4

5% [++, -, +, -] 5%

5% spin projection

[++, -, +, -] spin projection [++] 1.87-2.00

4 spin projection

Mn1 Mn2 Mn3 Mn4 Combinations Error range

1.87~ 2.00 -1.20~ -1.03 0.90 ~ 1.25 -1.05 ~ -0.65 [++, -, +, -] < 5%

1.38 ~ 1.41 -0.66 ~ -0.65 -0.67 ~ -0.65 0.90 ~ 0.94 [++, -, -, +] > 5%

1.06 ~ 1.25 -0.65 ~ -0.80 -0.92 ~ -0.65 1.21 ~ 1.50 [+, -, -, ++] > 5%

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35

PELDOR τʹ = 180

3-8 spin projection

τʹ = 175 - 185 ns 5% [++, -, +, -] [++, -,

-, +] [+, -, -, ++] A B spin projection [++] [+]

C D spin projection [-]

C Mn2 D spin projection [-] [++, -, +, -] Mn4 [++, -, -, +]

[+, -, -, ++] Mn3 [++, -, -, +] [+, -, -, ++] 5%

[++] 1.38-1.41

1.21-1.5 4 3-8A 3-7 [++,

-, -, +] [+, -, -, ++]

3-8 spin projection PELDOR

A spin projection B spin projection

C Mn2 spin projection

D Mn3 ([++, -, -, +], [+, -, -, ++]), Mn4 ([++, -, +, -]) spin projection

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36

4 Mn ESR S2 Mn

55Mn-ENDOR S2 4 Mn (III, IV, IV, IV)

PELDOR [++, -, +, -]

[++, -, +, -] spin projection 1.87-2.0

[++, -, -, +] 1.38-1.41 [+, -, -, ++] 1.21-1.5

14N ESEEM His332 Mn Mn(III)

His332 Mn Mn1 PELDOR [++, -, +, -] [++, -, -, +]

ESEEM Mn(III) spin projection 2

[++, -, +, -] 2 spin projection

ESEEM

[++, -, +, -] Mn J 4-1

Mn1-2 Mn3-4 X

Mn1-2 Mn2-3 2.8-2.9 Å Mn

4-1 X

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DFT Mn1,4 spin projection [++, -, -, +] S2

Mn [Ames et al. 2011; Cox et al. 2011]

PELDOR [++, -, +, -]

2

(1) PELDOR Mn

(2) Spin projection

(1) PELDOR Mn

X PS II S1 S1

S2 Mn 0.3 Å Ames

DFT [Ames et al. 2011] PELDOR X

Mn 0.3 Å PELDOR

[++, -, +, -] [++, -, -, +] 5% [+, -, -, ++]

10%

Mn [++, -, +, -] Mn

PELDOR

(2) Spin projection

Ames 55Mn-ENDOR DFT Mn

DFT Mn

PELDOR

Mn spin projection

PELDOR DFT

Mn

DFT [++, -,

-, +]

5 S2 Mn -YD

• PELDOR X

spin projection

Mn1 Mn3 spin projection Mn1-4 spin projection [1.97, -1.19,

1.17, -0.95] Mn1 Mn S2 Mn(III)

Mn1-2 Mn3-4 Mn1-3

[Asada et al. 2013]

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40

7

Faisal Hammad Mekky Koua

1

1 4

G

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