a multilingual, relational database of health evidence gabriel rada, daniel capurro, daniel perez...

31
A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Upload: maurice-sparks

Post on 16-Dec-2015

217 views

Category:

Documents


1 download

TRANSCRIPT

Page 1: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

A Multilingual, Relational Database of Health Evidence

Gabriel Rada, Daniel Capurro, Daniel PerezEpistemonikos foundation

Page 2: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Episte…what?

EPISTEMONIKOS(ΕΠΙΣΤΗΜΟΝΙΚΟΣ )

What is worth knowing

Page 3: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Who we areEpistemonikos is a nonprofit organization based in Santiago, Chile

Our mission is “to bring high quality information closer to health decision making”

Page 4: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

The problem: information overload

New oral anticoagulants in atrial fibrillation

Page 5: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation
Page 6: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

The problem is you dont know the secrets of PubMed

("Atrial Fibrillation"[Mesh] OR "Atrial Flutter"[Mesh] OR ((atrial OR auricular) AND (fibrillation* OR flutter*)) OR AF[Text Word]) AND ("Factor Xa/antagonists AND inhibitors"[Mesh] OR ((factor xa OR factors 10a OR fXa OR autoprothrombin c OR thrombokinase) AND inhibit[Text Word]) OR (activated AND (factor x OR factors 10) AND inhibitor*) OR xabans[Text Word] OR (antistasin OR apixaban OR betrixaban OR du 176b OR eribaxaban OR fondaparinux OR idraparinux OR otamixaban OR razaxaban OR rivaroxaban OR aygin OR ym 150 OR ym150 OR LY517717 OR darexaban OR edoxaban OR SSR126517E) OR ((dabigatran OR BIBR1048) OR ximelagatran OR AZD0837))

Page 7: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Oooops…..but you can search

“systematic reviews” [best evidence]

Page 8: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Much better, ah?Yoy can start reading

…see ya!

Page 9: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

8 systematic reviews for my question

Wake up!!! You have to read them, compare which

studies they include….and beg they are well conducted, say the same thing and address the same

studies. Out of bed, sleepyhead!!!

Page 10: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

The challenge: to separate the wheat from the chaff

23,000,000 records only in PubMed

• 0,25% are systematic reviews

Page 11: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Our goal

TO AGGREGATE ALL THE RELEVANT HEALTH EVIDENCE (FOR DECISION-MAKING) INTO A SINGLE DATABASE.

Page 12: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

www.epistemonikos.org

•Free•Released 1 year ago

Page 13: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

•Multilingual interface•Multilingual search•Translations of abstracts

Page 14: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

What evidence?

Systematic reviewsOverviews of reviewsHigh-quality structured summariesPrimary studies included in systematic reviews

Page 15: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Systematic reviews (SR) at the centre

• The average SR takes about 1-year of work

• We rescue that effort by storing identified studies

From: http://www.navigatingeffectivetreatments.org.au/understanding_systematic_reviews.html The Centre for Health Communication and Participation with support from the Australasian Cochrane Centre

Page 16: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

All that effort into a single database

Page 17: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

If the reviewers found it, we’ve got it

Unpublished!!!

Page 18: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Where do we search? 19 databases

Page 19: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

How do we feed Epistemonikos?

• Combination of machine technology and human collaboration

Page 20: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Automatic search and upload

Selection of actual systematic reviews by a network of collaborators

Extraction of the studies included in the systematic review

1

2

3

Page 21: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

RECORDS(Studies, reviews,

overviews)

RELATIONS

TRANSLATIONS

Not just recordsADDED VALUE

ADDITIONAL DATA

(metadata)

VISUALIZATION

Page 22: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Relations are stored in the database

Page 23: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

New anticoagulants for atrial fibrillation

Page 24: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

The numbers

• 158,211 records• 30,651 systematic reviews– The world’s biggest collection of certified

systematic reviews• 109,889 primary studies• +200 collaborators

Page 25: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Other 16 databases RELATIONS

TRANSLATIONS

Not just recordsADDED VALUE

ADDITIONAL DATA

(metadata)

VISUALIZATION

Cochrane

Dare

Pubmed

Epistemonikos

How Epistemonikos compares to existing resources?

Page 26: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Let’ see an example

New oral anticoagulants in atrial fibrillation

Page 27: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation
Page 28: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation
Page 29: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

All the evidence (systematic reviews and studies) for our question *The matrix of evidence is expected to be released at the end of this year

Page 30: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Conclusions

• One-stop shop for evidence• Multilingual database• User friendly• Relation between articles answering a similar

question• Visualisation of ‘all the evidence’ for a specific

question

Page 31: A Multilingual, Relational Database of Health Evidence Gabriel Rada, Daniel Capurro, Daniel Perez Epistemonikos foundation

Many thanks!!

Contact us:[email protected] [email protected]

…or follow us in your preferred language:English: @epistemonikosSpanish: @epistemonikosEsGerman: @epistemonikosDeFrench: @epistemonikosFr

….also in Facebook and google+

Portuguese: @epistemonikosPtItalian: @epistemonikosItArabic: @epistemonikosArDutch: @epistemonikosNlChinese: @epistemonikosZh