1 e research presented by: mohsen kahani computer engineering department ferdowsi university of...
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eResearchPresented by:
Mohsen Kahani Computer Engineering DepartmentFerdowsi University of Mashhad
http://profsite.um.ac.ir/~kahani٨٦هفته پژوهش – آذر
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What is eResearch?
Different Meaning Research thru Internet (aka. Search) Research as in OR (online survey) Process research proposal electronially (eg.
a web-based application) A Distributed computing environment for
doing computationally intensive researches
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Searching the web
Search engines How do they work?
1. Gathering information from the web (offline)
2. Indexing documents
3. Responding to the queryies
4. Rendering the findings
Different Search engines, different startegies General purpose vs. special purpose Search
engines
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The Invisible Web
What is it?• Part of the web that can’t be indexed by search engines
The invisible web is now (mostly) visible• Search engines are now more powerful
- Dynamic sites are indexed
- Use hints from sites (eg. robots.txt)
• Databases have opened their doors for search engines- Eg. Sciendirect, IEEEexplore, ACM, …
• Search engine have special tools- Eg. Google scholar, Google groups, Google Maps, …
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Academic Search
CiteSeer Scopus Google Scholar
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Citeseerhttp://citeseer.ist.psu.edu/
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Scopus
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Google Scholar
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Special Purpose Search Engines
1. Gathering Special Resources• Subject based search engines
• Audio/Video search engines
• 3D search engines
2. Using Special charatristics• Using thesaurus or ontology
• Natural Language Processing Capability
• Special Classification
3. Different Rendering
Depends on their Goals and charatristics
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Index of Topic Specific Search Engine
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Topic Specific Search Engine
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Topic Specific Search Engine
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Topic Specific Search Engine
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Image Search Engine
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Image Search Engine
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Audio/Video Search Engine
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Audio/Video Search Engine
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Audio Search Engine
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3D Search Enginehttp://shape.cs.princeton.edu/search.html
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3D Search Enginehttp://3d.csie.ntu.edu.tw/~dynamic/cgi-bin/DatabaseII_v1.8/
index.html
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Thing Finder
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Star Tree
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Natural Language Search
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Brain Boost
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Natural Language Search
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Meta Search Engines
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Meta Search Engines
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Meta Search Engines
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Reading Search Result
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Graphical Representation
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Graphical Representation
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Online Survey
Academic resources about online survey methods and techniques
• Exploring Online Research Methods Incorporating TRI-ORM - http://www.geog.le.ac.uk/orm/
• WebSM – Web Survey Methodology - http://www.websm.org/
• Questionnaire Design and Surveys Sampling - http://home.ubalt.edu/ntsbarsh/stat-data/Surveys.htm
Open source/Commercial online survey software• CHSM Survey Builder
- http://chnm.gmu.edu/tools/surveys/
• ASSET - http://technology.shu.edu/page/ASSET!OpenDocument
• LimeSurvey - http://www.limesurvey.org/
• Zoomerang - http://info.zoomerang.com/
• SurveyMonkey - http://www.surveymonkey.com/
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TRI-ORM
An online training package designed to support researchers using online research methods
• online surveys,
• virtual synchronous interviews
• and asynchronous interviews.
The website provides:• a self-learning online resource that covers both the
theoretical and practical aspects of online research
• access to a range of case studies and resource links
• discussion of the ethical issues of online research.
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TRI-ORMhttp://www.geog.le.ac.uk/
orm/
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Research Proposal Management
eResearch is a Web-based system for submission, workflow, approval and management of research information.
The system will assist the Organizer in standardizing the method in which human research studies are submitted, processed and reviewed.
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What is eIRB?
The IRB’s role will remain the same, the method in which they accept and manage protocol applications will change.
The system will be the tool used by the IRB to:• Collect study information• Schedule study reviews and studies to IRB meetings • Communicate study requests and status to the study team
The eIRB module consists of 5 projects: • Study• Continuing Review• Amendment• Reportable Events• Termination
The study project will be the first project of the eIRB module to be made available to the research community.
eIRB is the first module of the eResearch project and will be the vehicle for the IRB to streamline their business processes for handling NEW research studies with human subjects.
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Roles in the IRB Review Process
AncilliaryCommittees
IRB Office
Approvers
IRBCommittee
Researchers
Study Staff
Primary
Investigator
Study
Coordinator
Co-Investigator
Dept/Div Approver
Faculty Advisor
WinshipCancer
Instistute
EHSO Biosafety
Human
Embryonic Stem Cell
EHSO Radiation
Safety
IRB Administrator
IRB Director
Committee Chair
Committee
Member
Designated Reviewer
Read
ReadCreate
Edit
ReadCreate
EditSubmit
ReadCreate
Edit
ReadReturn to Study Team
Approve
ReadReturn to Study TeamAssign to Committee
Assign ReviewerPrepare Letter
Fwd Letter for ApprovalEdit Letter
Merge ConsentEdit Minutes
ReadReview
ApproveSend Letter to PI
Conflict of Interest
ReadReturn to Study Team
Approve
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eIRB Study Review Process
Reviewers verify relevant sections of the study,
request and obtain additional information from the study
team, and issue their approval through the system
Depending on study answers, system automatically
routes study to non - IRB Reviewers:
• EHSO Biosafety
• EHSO Radiation Safety
• SOMCOI
Pre-IRB Reviewers• Department or Division Head• Faculty Advisor• Winship Cancer Institute• Human Embryonic Stem Cell
Once Pre-IRB reviewers have given their approvals,
the study is received by the IRB Staff for processing
IRB staff manages the review process using eResearch• Request further information• Determine review method• Assign reviewers• Schedule study for IRB meetings• Accept non-IRB approvals
• IRB Committee members conduct reviews• IRB Committee decisions and minutes are recorded• IRB Staff prepare letters with IRB motions• Study team receives decisions• Schedule study for IRB meetings
With approved studies Study Team can:
• Conduct research
• Report events
• Submit Amendments
• Submit Continuing Review
• Request Terminations
PI/Study Coordinator submits eIRB study application
1. Create Study
2. Route Study
3. Review Study
4. Accept Study 5. Process Study
7. Approved Study
6. Finalize Decision
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Platform for Research Collaboration
Many sophisticated scientific discovery laboratories or the installation of sensor networks would produce a large amount of data.
These data have to be saved for future use and made available for collaborative use by researchers.
There is a need to develop a framework which can deal with storing such data volumes.
This framework should also handle disparate data sources tightly integrated with the users’ applications and large data streams arising from instruments and sensors.
A framework for servicing large dynamic data sets over a national grid for eResearch (in Australia).
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eResearch Infrastructure
Information
Computing Communications
GRID
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Grid Services for eResearch
User Communities
Web ServicesAdvanced Communications Services
CollaborativeVisualisation
DistributedComputing
InformationAccess
CooperativeEnvironments
On-LineInstruments
Physics Bio-informatics
Environment Astronomy
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Australian Partnershipfor
Advanced Computing
Providing the
Advanced Computing and Grid Infrastructure
for eResearch
http://www.apac.edu.au
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Darwin
USA
APAC Partners and Backbone Networks
GrangeNet Backbone
AARNet Links
Internet2CanarieGeantAPAN
APACNational Facility
BrisbaneQPSF
CanberraANU
MelbourneVPACCSIRO
Sydneyac3
PerthIVEC
CSIRO AdelaideSAPAC
HobartTPACCSIRO
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ACIGA Data Grid
MDSS
Environmental Monitors
ACIGA + APAC resources
Rsync/LDRRsync/LDR
GridFTPGridFTP
Australian Consortium for Interferometric Gravitational Astronomy
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Grange Net
A dynamic data storage framework for building very large-scale and heterogenous data storages over AARNet3 or Grangenet
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Grange Net
An overview of the dynamic data grid framework in context with digital data sources, applications, and network.
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National Data Architecture
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Digital Curation & Preservation
Preservation & curation repositories & access mechanisms, archival skills & infrastructure
Researcher Requires: Perpetual access, Curation, Training, Marketing
Supplier must ensure: Security - Access, Authorization, Authentication
by definition this is
which requires
Commercial Publishing
Contribution to & use of published resources requiring payment by readers
Affordable licenses for researcher access & discovery mechanisms
Open Access Publishing
Contribution to & use of published resources where content is regarded as ‘free’
Serviceable infrastructure for publication and access
Access to eContent
Tools & applications
Software that allows manipulation, modeling and analysis of data
Access to models, source code and open standards
Data Transfer
Science employing transfer and sharing of large volumes of data
Access to remotely held large datasets & high performance computing via affordable high bandwidth
Primary Data Sharing
Making research data available to other researchers
Accessible repositories & quick reference
eScience
Components of eResearch
Active management of databases including promotion of effective and widespread use of the datasets for their scientific & scholarly useful life
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Questions?
Thanks for your attention
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