cell communication-i pin ling ( 凌 斌 ), ph.d. department of microbiology & immunology, ncku...

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Cell Cell Communication-I Communication-I Pin Ling ( 凌 凌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; [email protected] Reference: “Mechanisms of Cell Communication”, The Cell (5th edition), Chapter 15

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Page 1: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Cell Cell Communication-ICommunication-I

Pin Ling ( 凌 斌 ), Ph.D.

Department of Microbiology & Immunology, NCKU

ext 5632; [email protected]

Reference:

“Mechanisms of Cell Communication”, The Cell (5th edition), Chapter 15

Page 2: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Outline General principles of cell communication

Signaling through G-protein-coupled cell surface receptors (GPCRs) and small intracellular mediators

Signaling through enzyme-coupled cell-surface receptors

Signaling pathways dependent on regulated proteolysis of latent gene regulatory proteins

Signaling in plants

Your involvement is the key to success in this lecture.

Page 3: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Features of Cell CommunicationFeatures of Cell Communication

1. A single host cell (E. Coli) or multicellular organisms need to communicate with environmental cues (stimuli), then leading to appropriate responses.

2. How to do “Communication” with environmental cues?=> Signaling Transduction

Page 4: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

What is Signaling Transduction?What is Signaling Transduction?

• Conversion of a signal from one physical or chemical form into another.

• The process initiated by recognition a Signal by a Sensor (receptor, kinase or enzyme) in the cell, then converting to one or more cellular responses through a series of signal

transmission.

Page 5: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Inputs

Responses

Signals

Cellular Responses (Proliferation, Differentiation, & Apoptosis)

Signaling Cascades Cell

Signaling Transduction Regulates Cellular Responses

Human

Page 6: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

ReceptorsReceptors

Signal Signal TransduceTransduce

rsrs

EffectorsEffectors

A simple scheme of signal A simple scheme of signal transductiontransduction

Molecules involved in this process,

called Signaling Molecules

Page 7: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Figure 15-2 Molecular Biology of the Cell (© Garland Science 2008)

Budding yeast cells responding Budding yeast cells responding to to a mating factor (Pheromone)a mating factor (Pheromone)

Budding yeast

Page 8: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Features of Cell Features of Cell Communication-ICommunication-I

1. Signal molecules bind to surface or intracellular receptors.

2. There are four types of cellular signaling: (1) Cell contact, (2) Paracrine, (3) Synaptic, and (4) Endocrine.

3. Extracellular signal molecules can act over short or

long distance.

4. Extracellular signals can act slowly or rapidly to change the behavior of a target cell.

Page 9: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Cell surface vs intracellular Cell surface vs intracellular receptorsreceptors

Page 10: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Four types of intercellular Four types of intercellular signalingsignaling

Page 11: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling via gap junctions Signaling via gap junctions

Page 12: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Strategies for long-range Strategies for long-range signalingsignaling

Page 13: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Early vs later responses to Early vs later responses to extracellular signals extracellular signals

Page 14: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Features of Cell Features of Cell Communication-IICommunication-II

1. Each cell is programmed to respond to the combinations of extracellular signal molecules.

2. Different cell types respond differently to the same extracellular signal molecules.

3. The same cell type can act differently depending upon signal concentration.

4. Examples of intracellular signaling, e.g. NO signaling, Nuclear receptor signaling.

Page 15: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Combinations of total Combinations of total signals decide the cell fatesignals decide the cell fate

Page 16: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Various cellular Various cellular responses induced by responses induced by

acetylcholineacetylcholine

Page 17: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

The same cell type can act The same cell type can act differently upon signal differently upon signal

concentrationconcentration

Page 18: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

NO functions in smooth NO functions in smooth muscle relaxationmuscle relaxation

Page 19: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Steroid hormones & other Steroid hormones & other non-gaseous signal non-gaseous signal

molecules molecules

Page 20: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

The Nuclear Receptor FamilyThe Nuclear Receptor Family

Page 21: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Activation of nuclear Activation of nuclear receptors by ligand bindingreceptors by ligand binding

Page 22: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Primary & secondary Primary & secondary responses by nuclear responses by nuclear

receptorsreceptors

Page 23: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Outline General principles of cell communication

Signaling through G-protein-coupled cell surface receptors (GPCRs) and small intracellular mediators

Signaling through enzyme-coupled cell-surface receptors

Signaling pathways dependent on regulated proteolysis of latent gene regulatory proteins

Signaling in plants

Page 24: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Three classes of cell surface Three classes of cell surface receptorsreceptors

Page 25: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Three classes of cell surface Three classes of cell surface receptorsreceptors

Page 26: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Features of intracellular Features of intracellular signaling pathways-I signaling pathways-I

1. Small intracellular signaling molecules => 2nd messengers, e.g. Ca2+, cAMP, or Diacylglycerol (DAG).

2. Large intracellular signaling molecules => Signaling proteins

3. Signaling proteins act as “Molecular Switches” regulated by post-translational modifications (PTMs).

4. Signaling complex formation enhances the efficiency & specificity of the response.

5. Modular interaction domains mediate interactions between signaling proteins

Page 27: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

A A Signaling Signaling cascade: A cascade: A surface surface receptor to receptor to the the nucleusnucleus

Page 28: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Molecular Switches: Molecular Switches:

Post-Translational Post-Translational ModificationsModifications

Page 29: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signal IntegrationSignal Integration

Page 30: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling complex formation Signaling complex formation by a scaffold proteinby a scaffold protein

Page 31: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling complex formation Signaling complex formation by by

an activated receptoran activated receptor

Page 32: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling complex formation Signaling complex formation on phosphoinositoide on phosphoinositoide

docking sites docking sites

Page 33: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling complex formation Signaling complex formation usingusing

modular interaction domains modular interaction domains

Page 34: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Features of intracellular Features of intracellular signaling pathways-II signaling pathways-II

1. Cells can respond abruptly or gradually to an increasing signal.

2. Intracellular signaling networks use feedback loops to regulate the process.

3. Cells can adjust their sensitivity to a signal.

Page 35: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Smoothly graded vs Smoothly graded vs switchlike signaling switchlike signaling

responses-Iresponses-I

Page 36: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Smoothly graded vs Smoothly graded vs switchlike signaling switchlike signaling

responses-IIresponses-II

Page 37: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Activation curves for an allosteric Activation curves for an allosteric protein by various effector protein by various effector concentrationsconcentrations

Page 38: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

A positive vs negative A positive vs negative feedback loopfeedback loop

Page 39: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Positive vs negative Positive vs negative feedback loopfeedback loop

Page 40: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

An example of An example of a positive a positive feedback loopfeedback loop

Page 41: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Many ways to become Many ways to become desensitized (adapted) to a desensitized (adapted) to a

signalsignal

Page 42: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Outline General principles of cell communication

Signaling through G-protein-coupled cell surface receptors (GPCRs) and small intracellular mediators

Signaling through enzyme-coupled cell-surface receptors

Signaling pathways dependent on regulated proteolysis of latent gene regulatory proteins

Signaling in plants

Page 43: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling through G-protein-Signaling through G-protein-coupled cell surface receptors coupled cell surface receptors

(GPCRs)-I(GPCRs)-I1. GPCRs are the largest family of cell-surface

receptors (700 GRCRs in human). They mediate our sense of sight, smell, and taste.

2. Extracellular signaling molecules acting on GPCRs are varied in structure, including hormones, lipid mediators, & neurotransmitters.

3. All GPCRs have a common structure- a seven transmembrane peptide

4. All GPCRs use G proteins to relay the signal into the cell.

Page 44: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Signaling through G-protein-Signaling through G-protein-coupled cell surface receptors coupled cell surface receptors

(GPCRs)-II(GPCRs)-II5. Some G proteins regulate the production of

cyclic AMP.

6. Some G proteins activate an inosital phospholipid signaling pathway via Phospholipase C-beta (PLC-b).

Page 45: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

GPCRs and G ProteinGPCRs and G Protein

GPCR

G Protein: subunit: GTPase subunit & subunit

Page 46: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Activation of Activation of GPCRs & GPCRs &

G ProteinG Protein

Page 47: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

cAMP links some GPCR cAMP links some GPCR signals to gene expressionsignals to gene expression

Page 48: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Some hormones act GPCR Some hormones act GPCR via cAMPvia cAMP

Page 49: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Activation of cAMP-dep Activation of cAMP-dep protein kinase (PKA)protein kinase (PKA)

Page 50: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Some GPCRs activate PKC Some GPCRs activate PKC and cytosolic Caand cytosolic Ca2+2+

Page 51: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of
Page 52: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

CaCa2+2+-mediated intracellular -mediated intracellular SignalingSignaling

1. Ca2+ functions as an intracellular mediator.

2. Ca2+ enter the cytosol from outside through various Ca2+ ion channel.

3. Ca2+ from the ER enter the cytosol through IP3

receptors or ryanodine receptors.

4. Several mechanisms keep Ca2+ in the cytosol low in resting cells.

5. Ca2+ oscillations affect a cell response.

6. Ca2+/Calmodulin-dep protein kinase mediate cellular responses (learning & memory in the nervous system).

Page 53: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Ca2+ functions as an Ca2+ functions as an intracellular mediatorintracellular mediator

Page 54: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Multiple ways to keep Ca2+ Multiple ways to keep Ca2+ low in the cytosollow in the cytosol

Page 55: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Vasopressin-induced Ca2+ Vasopressin-induced Ca2+ oscillations in a liver celloscillations in a liver cell

Vasopressin

GPCR

PLC-

Ca2+ oscillations

Page 56: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Activation of CaM-kinase IIActivation of CaM-kinase II

Page 57: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

CaM-kinase II as a CaM-kinase II as a frequency decoder of Ca2+ frequency decoder of Ca2+

oscillationsoscillations

Page 58: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Smell &vision depend on Smell &vision depend on GPCRsGPCRs

Page 59: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

A rod photoreceptor cell & A rod photoreceptor cell & its response to lightits response to light

Page 60: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

A rod A rod photoreceptor photoreceptor cell & its cell & its response response

to lightto light

Page 61: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Four major families of Four major families of trimeric G proteinstrimeric G proteins

Page 62: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

GPCR desensitization GPCR desensitization depends on receptor depends on receptor

phosphorylationphosphorylation

Page 63: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

““Cell Communication Cell Communication II” to be continuedII” to be continued

Page 64: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of

Figure 15-47 Molecular Biology of the Cell (© Garland Science 2008)

Page 65: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of
Page 66: Cell Communication-I Pin Ling ( 凌 斌 ), Ph.D. Department of Microbiology & Immunology, NCKU ext 5632; lingpin@mail.ncku.edu.tw Reference: “Mechanisms of