Download - Lecture Intro
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CPMD Tutorial
Car–Parrinello Molecular Dynamics
Ari P SeitsonenCNRS & Universite Pierre et Marie Curie, Paris
CSC, October 2006
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Introduction
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CPMD — concept 1
• Car-Parrinello Molecular Dynamics – Roberto Car & Michele Parrinello,Physical Review Letters 55, 2471 (1985) — 20+1 years of Car-Parrinellomethod!
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Roberto Car Michele Parrinello
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CPMD — concept 2
• CPMD code — http://www.cpmd.org/ ; based on the original code of RobertoCar and Michele Parrinello
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CPMDWhat is it, what is it not?
• Computer code for performing static, dynamic simulations and analysis ofelectronic structure
• About 200’000 lines of code — FORTRAN77 with a flavour towards F90
• (Freely) available via http://www.cpmd.org/ with source code
• Most suitable for dynamical simulations of condensed systems or largemolecules — less for small molecules or bulk properties of small crystals
• Computationally highly optimised for vector and scalar supercomputers,shared and distributed memory machines and combinations thereof (SMP)
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Capabilities• Solution of electronic and ionic structure
• XC-functional: LDA, GGA, meta-GGA, hybrid
• Molecular dynamics in NVE, NVT, NPT ensembles
• General constraints (MD and geometry optimisation)
• Metadynamics ‡
• Free energy functional ‡
• Path integrals ‡
• QM/MM ‡
• Wannier functions
• Response properties: TDDFT, NMR, Raman, IR, . . .
• Norm conserving and ultra-soft pseudo potentials
‡ : Will not be considered during this course
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CPMD: ExamplesAmorphous Si
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CPMD: ExamplesAmorphous Si
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CPMD: ExamplesLiquid water: Solvation and transport of ions
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CPMD: ExamplesLiquid water: Solvation and transport of ions
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CPMD: ExamplesRNA duplex
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CPMD: ExamplesRNA duplex
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CPMD: ExamplesReactions in supercritical water
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CPMD: ExamplesReactions in supercritical water
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CPMD: ExamplesAlkane thiols and gold clusters
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CPMD: ExamplesAlkane thiols and gold clusters
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CPMD: ExamplesQM/MM & electronic excitations
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CPMD: ExamplesQM/MM & electronic excitations
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(Similar) AlternativesTo be fair; for solid-state/dense systems
• cp2k (http://cp2k.berlios.de/)
• abinit (http://www.abinit.org/)
• ν-espresso (PWSCF, CP, FPMD) (http://www.pwscf.org/)
• NWChem
• CP-PAW
• PINY MD
• Commercial:
– Wien2k (FLAPW)
– VASP
– CASTEP
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Out-lineLectures
• Tuesday:
– DFT in plane waves
– Pseudo potentials
– CPMD: Basic use; optimisation electronic and ionic structure
– Basic molecular dynamics; Born-Oppenheimer and Car-Parrinello dynamics
• Wednesday:
– Enhanced molecular dynamics: Thermostats, constraints
– Analysis; electron densities, orbitals, Wannier orbitals, radial distributions(g(r) e. g. )
– Alternative topics: TDDFT (electronic excitations), lattices/solid state,water, . . .
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Terminal exercises
• Tuesday
– Basic use; electronic and ionic structure
– Born-Oppenheimer and Car-Parrinello molecular dynamics
• Wednesday:
– Molecular dynamics using thermostats, constraints
– Analysis
– Alternative topics, case studies
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apsi & Otto Anatole von Lilienfeld-Toal. . . and the Swiss Alps
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Ari Paavo Seitsonen, apsi
• Contact
URL: http://www.iki.fi/ apsi/
email: [email protected], [email protected]
SkyPE: ari.p.seitsonen
messenger: [email protected]
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Acknowledgements... for the discussions, help, material, . . . !
• Otto Anatole von Lilienfeld-Toal
• Jurg Hutter
• Daniel Sebastiani
• Barbara Kirchner
• Ivano Tavernelli
• Marcella Iannuzzi
• Axel Kohlmeyer
• Rodolphe Vuilleumier
• Michiel Sprik
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Questions?