0.2substituions / site

Lactobacillus fermentum IFO 3956 Lactobacillus reuteri F275

Lactobacillus plantarum WCFS1 Lactobacillus brevis ATCC 367 Lactobacillus salivarius UCC118 Pediococcus pentosaceus ATCC 25745

Lactobacillus sakei subsp. sakei 23K Lactobacillus casei ATCC 334

Lactobacillus gasseri ATCC 33323 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842

Lactobacillus helveticus DPC 4571 Lactobacillus acidophilus NCFM

Oenococcus oeni PSU-1 Leuconostoc citreum KM20 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Lactococcus lactis subsp. lactis Il1403 Streptococcus sanguinis SK36 Streptococcus pneumoniae TIGR4 Streptococcus suis 05ZYH33 Streptococcus mutans UA159 Streptococcus thermophilus LMG 18311 Streptococcus pyogenes M1 GAS

Listeria monocytogenes EGD-e Lysinibacillus sphaericus C3-41

Staphylococcus aureus subsp. aureus MW2 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Staphylococcus haemolyticus JCSC1435 Staphylococcus epidermidis ATCC 12228

Oceanobacillus iheyensis HTE831 Exiguobacterium sibiricum 255-15

Bacillus clausii KSM-K16 Bacillus halodurans C-125

Bacillus licheniformis ATCC 14580 Bacillus pumilus SAFR-032 Bacillus subtilis subsp. subtilis str. 168 Bacillus weihenstephanensis KBAB4 Bacillus thuringiensis serovar konkukian str. 97-27

Geobacillus thermodenitrificans NG80-2 Geobacillus kaustophilus HTA426

Aster yellows witches'-broom phytoplasma AYWB Onion yellows phytoplasma OY-M

Candidatus Phytoplasma australiense Candidatus Phytoplasma mali

Acholeplasma laidlawii PG-8A Mycoplasma capricolum subsp. capricolum ATCC 27343 Mesoplasma florum L1

Mycoplasma pneumoniae M129 Mycoplasma genitalium G37

Mycoplasma gallisepticum R Ureaplasma parvum serovar 3 str. ATCC 700970 Mycoplasma penetrans HF-2

Mycoplasma arthritidis 158L3-1 Mycoplasma hyopneumoniae 232

Mycoplasma mobile 163K Mycoplasma pulmonis UAB CTIP Mycoplasma synoviae 53

Mycoplasma agalactiae PG2 Natranaerobius thermophilus JW/NM-WN-LF

Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter tengcongensis MB4 Caldicellulosiruptor saccharolyticus DSM 8903

Clostridium thermocellum ATCC 27405 Alkaliphilus metalliredigens QYMF

Alkaliphilus oremlandii OhILAs Clostridium difficile 630

Finegoldia magna ATCC 29328 Clostridium phytofermentans ISDg

Clostridium novyi NT Clostridium acetobutylicum ATCC 824 Clostridium kluyveri DSM 555 Clostridium botulinum A str. ATCC 19397 Clostridium perfringens str. 13 Clostridium beijerinckii NCIMB 8052

Acetonema longum Syntrophomonas wolfei subsp. wolfei str. Goettingen

Moorella thermoacetica ATCC 39073 Desulfitobacterium hafniense Y51

Heliobacterium modesticaldum Ice1 Carboxydothermus hydrogenoformans Z-2901 Desulfotomaculum reducens MI-1

Candidatus Desulforudis audaxviator MP104C Pelotomaculum thermopropionicum SI

Symbiobacterium thermophilum IAM 14863 Cyanothece sp. ATCC 51142 Synechocystis sp. PCC 6803

Microcystis aeruginosa NIES-843 Synechococcus sp. PCC 7002 Trichodesmium erythraeum IMS101

Nostoc punctiforme PCC 73102 Anabaena variabilis ATCC 29413

Acaryochloris marina MBIC11017 Thermosynechococcus elongatus BP-1 Synechococcus elongatus PCC 6301

Synechococcus sp. RCC307 Prochlorococcus marinus subsp. marinus str. CCMP1375 Synechococcus sp. CC9902 Synechococcus sp. WH 8102 Synechococcus sp. WH 7803 Synechococcus sp. CC9311

Synechococcus sp. JA-2-3B'a{2-13} Synechococcus sp. JA-3-3Ab

Gloeobacter violaceus PCC 7421 Dehalococcoides sp. BAV1 Dehalococcoides ethenogenes 195

Herpetosiphon aurantiacus ATCC 23779 Chloroflexus aurantiacus J-10-fl Roseiflexus castenholzii DSM 13941 Roseiflexus sp. RS-1

Mycobacterium gilvum PYR-GCK Mycobacterium vanbaalenii PYR-1 Mycobacterium sp. KMS Mycobacterium smegmatis str. MC2 155 Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium leprae TN Mycobacterium ulcerans Agy99 Mycobacterium tuberculosis CDC1551

Mycobacterium abscessus Rhodococcus sp. RHA1 Nocardia farcinica IFM 10152

Corynebacterium urealyticum DSM 7109 Corynebacterium jeikeium K411 Corynebacterium diphtheriae NCTC 13129 Corynebacterium glutamicum ATCC 13032 Corynebacterium efficiens YS-314

Saccharopolyspora erythraea NRRL 2338 Salinispora tropica CNB-440

Frankia sp. EAN1pec Frankia alni ACN14a Frankia sp. CcI3 Thermobifida fusca YX Acidothermus cellulolyticus 11B

Streptomyces griseus subsp. griseus NBRC 13350 Streptomyces coelicolor A3{2} Streptomyces avermitilis MA-4680

Propionibacterium acnes KPA171202 Nocardioides sp. JS614

Kineococcus radiotolerans SRS30216 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Leifsonia xyli subsp. xyli str. CTCB07

Tropheryma whipplei TW08/27 Kocuria rhizophila DC2201 Renibacterium salmoninarum ATCC 33209

Arthrobacter aurescens TC1 Arthrobacter sp. FB24

Bifidobacterium adolescentis ATCC 15703 Bifidobacterium longum NCC2705

Rubrobacter xylanophilus DSM 9941 Fervidobacterium nodosum Rt17-B1

Thermosipho melanesiensis BI429 Thermotoga lettingae TMO

Thermotoga maritima MSB8 Petrotoga mobilis SJ95

Coprothermobacter proteolyticus DSM 5265 Dictyoglomus thermophilum H-6-12

Deinococcus geothermalis DSM 11300 Deinococcus radiodurans R1

Thermus thermophilus HB27 Sulfurihydrogenibium sp. YO3AOP1

Hydrogenobaculum sp. Y04AAS1 Aquifex aeolicus VF5

Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Thermodesulfovibrio yellowstonii DSM 11347

Chlamydophila abortus S26/3 Chlamydophila caviae GPIC Chlamydophila felis Fe/C-56 Chlamydophila pneumoniae CWL029 Chlamydia muridarum Nigg Chlamydia trachomatis D/UW-3/CX

Candidatus Protochlamydia amoebophila UWE25 Akkermansia muciniphila ATCC BAA-835

Methylokorus infernorum V4 Opitutus terrae PB90-1

Rhodopirellula baltica SH 1 Elusimicrobium minutum Pei191

Leptospira borgpetersenii serovar Hardjo-bovis JB197 Leptospira interrogans serovar Lai str. 56601 Leptospira biflexa serovar Patoc strain 'Patoc 1 {Ames}' Treponema denticola ATCC 35405

Treponema pallidum subsp. pallidum str. Nichols Treponema primitia

Borrelia hermsii DAH Borrelia turicatae 91E135 Borrelia duttonii Ly Borrelia burgdorferi B31 Borrelia afzelii PKo Borrelia garinii PBi

Chlorobium chlorochromatii CaD3 Pelodictyon phaeoclathratiforme BU-1 Prosthecochloris vibrioformis DSM 265 Pelodictyon luteolum DSM 273 Chlorobium limicola DSM 245 Chlorobium phaeobacteroides DSM 266 Chlorobium tepidum TLS

Prosthecochloris aestuarii DSM 271 Chloroherpeton thalassium ATCC 35110

Salinibacter ruber DSM 13855 Candidatus Amoebophilus asiaticus 5a2

Cytophaga hutchinsonii ATCC 33406 Flavobacterium psychrophilum JIP02/86

Flavobacterium johnsoniae UW101 Gramella forsetii KT0803

Candidatus Sulcia muelleri GWSS Parabacteroides distasonis ATCC 8503 Porphyromonas gingivalis W83

Bacteroides vulgatus ATCC 8482 Bacteroides fragilis YCH46 Bacteroides thetaiotaomicron VPI-5482

Geobacter metallireducens GS-15 Geobacter sulfurreducens PCA Geobacter bemidjiensis Bem Geobacter uraniireducens Rf4 Geobacter lovleyi SZ Pelobacter propionicus DSM 2379

Pelobacter carbinolicus DSM 2380 Syntrophobacter fumaroxidans MPOB

Desulfotalea psychrophila LSv54 Syntrophus aciditrophicus SB Desulfococcus oleovorans Hxd3 Sorangium cellulosum 'So ce 56'

Myxococcus xanthus DK 1622 Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter dehalogenans 2CP-C

Acidobacteria bacterium Ellin345 Solibacter usitatus Ellin6076

Desulfovibrio desulfuricans subsp. desulfuricans str. G20 Lawsonia intracellularis PHE/MN1-00

Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Bdellovibrio bacteriovorus HD100

Campylobacter concisus 13826 Campylobacter curvus 525.92

Campylobacter hominis ATCC BAA-381 Campylobacter fetus subsp. fetus 82-40

Campylobacter jejuni subsp. jejuni NCTC 11168 Sulfurovum sp. NBC37-1

Sulfurimonas denitrificans DSM 1251 Arcobacter butzleri RM4018

Nitratiruptor sp. SB155-2 Wolinella succinogenes DSM 1740 Helicobacter hepaticus ATCC 51449

Helicobacter pylori J99 Methylobacterium radiotolerans JCM 2831 Methylobacterium extorquens PA1 Methylobacterium sp. 4-46

Beijerinckia indica subsp. indica ATCC 9039 Azorhizobium caulinodans ORS 571 Xanthobacter autotrophicus Py2 Oligotropha carboxidovorans OM5 Nitrobacter hamburgensis X14 Nitrobacter winogradskyi Nb-255 Rhodopseudomonas palustris CGA009 Bradyrhizobium sp. BTAi1 Bradyrhizobium japonicum USDA 110

Rhizobium leguminosarum bv. viciae 3841 Rhizobium etli CFN 42 Agrobacterium tumefaciens str. C58

Sinorhizobium meliloti 1021 Mesorhizobium sp. BNC1 Mesorhizobium loti MAFF303099 Ochrobactrum anthropi ATCC 49188 Brucella suis 1330

Bartonella bacilliformis KC583 Bartonella tribocorum CIP 105476 Bartonella henselae str. Houston-1 Bartonella quintana str. Toulouse

Parvibaculum lavamentivorans DS-1 Caulobacter sp. K31 Caulobacter crescentus CB15 Phenylobacterium zucineum HLK1

Hyphomonas neptunium ATCC 15444 Maricaulis maris MCS10 Rhodobacter sphaeroides 2.4.1 Paracoccus denitrificans PD1222 Dinoroseobacter shibae DFL 12

Jannaschia sp. CCS1 Roseobacter denitrificans OCh 114 Silicibacter sp. TM1040 Silicibacter pomeroyi DSS-3

Erythrobacter litoralis HTCC2594 Novosphingobium aromaticivorans DSM 12444 Sphingopyxis alaskensis RB2256 Sphingomonas wittichii RW1 Zymomonas mobilis subsp. mobilis ZM4

Rhodospirillum rubrum ATCC 11170 Magnetospirillum magneticum AMB-1 Rhodospirillum centenum SW

Acidiphilium cryptum JF-5 Granulibacter bethesdensis CGDNIH1 Gluconacetobacter diazotrophicus PAl 5 Gluconobacter oxydans 621H

Candidatus Pelagibacter ubique HTCC1062 Rickettsia typhi str. Wilmington Rickettsia prowazekii str. Madrid E

Rickettsia conorii str. Malish 7 Rickettsia canadensis str. McKiel Rickettsia felis URRWXCal2 Rickettsia bellii RML369-C

Orientia tsutsugamushi str. Boryong Neorickettsia sennetsu str. Miyayama

Wolbachia pipientis Wolbachia endosymbiont of Drosophila melanogaster Wolbachia endosymbiont strain TRS of Brugia malayi

Anaplasma phagocytophilum HZ Anaplasma marginale str. St. Maries

Ehrlichia canis str. Jake Ehrlichia ruminantium str. Welgevonden

Magnetococcus sp. MC-1 Coxiella burnetii RSA 493

Verminephrobacter eiseniae EF01-2 Acidovorax avenae subsp. citrulli AAC00-1 Acidovorax sp. JS42 Delftia acidovorans SPH-1 Rhodoferax ferrireducens T118 Polaromonas naphthalenivorans CJ2 Polaromonas sp. JS666 Leptothrix cholodnii SP-6 Methylibium petroleiphilum PM1

Bordetella petrii DSM 12804 Bordetella avium 197N Bordetella bronchiseptica RB50

Herminiimonas arsenicoxydans Janthinobacterium sp. Marseille

Polynucleobacter necessarius STIR1 Polynucleobacter sp. QLW-P1DMWA-1 Burkholderia mallei ATCC 23344 Ralstonia metallidurans CH34 Ralstonia eutropha JMP134 Ralstonia pickettii 12J Ralstonia solanacearum GMI1000

Dechloromonas aromatica RCB Azoarcus sp. BH72 Aromatoleum aromaticum EbN1

Thiobacillus denitrificans ATCC 25259 Methylobacillus flagellatus KT Nitrosospira multiformis ATCC 25196

Nitrosomonas eutropha C91 Nitrosomonas europaea ATCC 19718

Neisseria meningitidis Z2491 Chromobacterium violaceum ATCC 12472 Acidithiobacillus ferrooxidans ATCC 53993

Methylococcus capsulatus str. Bath Nitrosococcus oceani ATCC 19707

Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Stenotrophomonas maltophilia R551-3 Xanthomonas campestris pv. campestris str. ATCC 33913

Xylella fastidiosa 9a5c Dichelobacter nodosus VCS1703A

Halothiobacillus neapolitanus Halorhodospira halophila SL1

Alkalilimnicola ehrlichei MLHE-1 Candidatus Vesicomyosocius okutanii HA

Candidatus Ruthia magnifica str. Cm {Calyptogena magnifica} Thiomicrospira crunogena XCL-2 Francisella philomiragia subsp. philomiragia ATCC 25017 Francisella tularensis subsp. tularensis SCHU S4

Pseudomonas fluorescens Pf-5 Pseudomonas putida KT2440 Pseudomonas aeruginosa PAO1

Pseudomonas mendocina ymp Pseudomonas stutzeri A1501

Cellvibrio japonicus Ueda107 Saccharophagus degradans 2-40

Marinomonas sp. MWYL1 Chromohalobacter salexigens DSM 3043 Hahella chejuensis KCTC 2396

Marinobacter aquaeolei VT8 Alcanivorax borkumensis SK2

Acinetobacter baumannii ATCC 17978 Psychrobacter sp. PRwf-1 Psychrobacter cryohalolentis K5

Pseudoalteromonas atlantica T6c Alteromonas macleodii 'Deep ecotype' Idiomarina loihiensis L2TR Pseudoalteromonas haloplanktis TAC125 Colwellia psychrerythraea 34H

Psychromonas ingrahamii 37 Aeromonas hydrophila subsp. hydrophila ATCC 7966

Shewanella sediminis HAW-EB3 Shewanella woodyi ATCC 51908 Shewanella halifaxensis HAW-EB4 Shewanella loihica PV-4 Shewanella frigidimarina NCIMB 400 Shewanella denitrificans OS217 Shewanella baltica OS185 Shewanella oneidensis MR-1

Shewanella amazonensis SB2B Aliivibrio salmonicida LFI1238 Vibrio fischeri ES114

Photobacterium profundum SS9 Vibrio parahaemolyticus RIMD 2210633 Vibrio vulnificus CMCP6 Vibrio cholerae O1 biovar eltor str. N16961

Haemophilus somnus 129PT Haemophilus ducreyi 35000HP

Pasteurella multocida subsp. multocida str. Pm70 Proteus mirabilis HI4320 Enterobacter sp. 638 Escherichia coli O157|H7 EDL933 Erwinia tasmaniensis Yersinia pestis CO92 Pectobacterium atrosepticum SCRI1043 Sodalis glossinidius str. 'morsitans'

Baumannia cicadellinicola str. Hc {Homalodisca coagulata} Buchnera aphidicola str. Bp {Baizongia pistaciae}

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Candidatus Blochmannia floridanus

Candidatus Blochmannia pennsylvanicus str. BPEN

Thermotogae

Firmicutes

Cyanobacteria

Chloroflexi

Actinobacteria

Deinococcus/ThermusAquificaeChlaymidiaeVerrucomicrobia

Spirochaetes

Chlorobi

Bacteroidetes

Delta-proteobacteria

Epsilon-proteobacteria

Alpha-proteobacteria

Beta/Gamma-proteobacteria