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HIT-Harbin iGEM 2011

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Page 1: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

HIT-Harbin iGEM 2011

Page 2: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1
Page 3: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

Yogurts under normal temperature

………… A few days later

It is too acid

Page 4: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

Why yogurt

Lactobacillus bulgaricus

Streptococcus thermophiles

Page 5: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

Why yogurt

Yogurt is rich in nutrition.

More importantly, consumers who are moderately lactose-intolerant can consume yoghurt without unfavorable symptoms, especially for Chinese people.

Page 6: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

Why yogurt

The distribution of people who are lactose-intolerant.

Page 7: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1.Post-acidification

2.Collagen

3.Food-grade vectors

4.Tests & results

Page 8: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1.Post-acidification

Page 9: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

Especially L. bulgaricus

Page 10: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

pH sensor

Cut off the pathway for lactic acid

Page 11: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

Some genes must be up-regulated or down-regulated in order to adapt to the acid environment.

Possible acid tolerance mechanisms of lactic acid bacteria.

Page 12: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

rcfB promoter

H+

H+ H+

H+

H+

H+

H+ H+

pH=5.5 Up-regulate

In Lactococcus lactis IL1403

1. Post-acidification

Page 13: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

The metabolic pathway of lactose

Page 14: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

The lac operon in L. delbrueckii subsp. lactis

lacA OP

lacS lacZ lacR

lactose permease

Β-galactosidase

repressor

Page 15: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

lacA OP

lacS lacZ lacR

the lacR gene was inactivated by small nucleotides insertions and deletions in the sequence

The lac operon in L. bulgaricus

Page 16: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

1. Post-acidification

H+

H+

H+

rcfB promoter

H+

H+ H+

H+

lacR RBS

lacA OP

LacR

T

lacS lacZ lacR

LacR

LacR

H+

H+ H+

H+

Page 17: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

2.Collagen

Page 18: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

2. Collagen

…………

Page 19: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

2. Collagen

Zhou Qian, et al. Modern Food Science and Technology, 2008, 24(3):285-287.

Page 20: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

2. Collagen

The parts for producing collagen

His T RBS blpC

p32 premotor

COLⅢα1

COLⅢα1 is part of the α1 chain of human collagen type Ⅲ.

Page 21: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

2. Collagen

The sequence of collagen had been optimized for an efficient expression in S. thermophilus.

Page 22: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

COLⅢα1 BlpC

COLⅢα1

BlpC is the signal peptide

COLⅢα1 BlpC

COLⅢα1

COLⅢα1

COLⅢα1

2. Collagen

BlpC

Page 23: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

3.Food-grade vectors

Page 24: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

3. Food-grade vector

The E.coli-Lactococcus lactis shuttle plasmid pMG36e

Page 25: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

3. Food-grade vector

Change Emr to NisI

Page 26: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

3. Food-grade vector

A long history of safe use in food production

Structure of Nisin

Page 27: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

4.Tests & results

Page 28: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

4. Tests & results

rcfB promoter

lacR RBS T

His T RBS blpC

p32 premotor

COLⅢα1

Our four biobricks.

E X S P

S P E X

Page 29: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

nisI T RBS

nisI T RBS blpC

nisI for L. bulgaricus ——nisI(Ⅰ)

nisI for S.thermophilus——nisI (Ⅱ)

4. Tests & results

E X S P

E X S P

peptide

Page 30: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

4. Tests & results

Ligation

rcfB promoter

lacR RBS T

S P

nisI T RBS

E X

peptide

S/X

His T RBS blpC

p32 premotor

COLⅢα1 nisI T RBS blpC

E X S P S/X

Page 31: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

4. Tests & results

Ligate with the pMG36e

Page 32: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

Ligate with the pMG36e

4. Tests & results

Page 33: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

4. Tests & results

The two recombinant plasmids are transformd to L.bulgaricus and S.thermophiles separately by electroporation.

Further experiments are under way.

Page 34: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

More needs to be done ……

• Whether the nisI genes work

• Knock out the erythromycin resistance gene

• Whether the collagen peptide is expressed

• Whether the pH sensor works

Page 35: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1

Acknowledgment:

Prof. Dechang Xu

Dr. Cuihong Dai

Prof. Steve Zeng

Sponsor:

Lec. Xue Han

Page 36: HIT-Harbin - 2011.igem.org2011.igem.org/files/presentation/HIT-Harbin.pdf · HIT-Harbin iGEM 2011 . Yogurts under normal temperature ... BlpC COLⅢα1 COLⅢα1