interactions of sumo within the jak/stat transcription pathway a new method to analyze the...
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Interactions of SUMO within Interactions of SUMO within the JAK/STAT transcription the JAK/STAT transcription
pathwaypathwayA new method to analyze the regulation of the JAK/STAT A new method to analyze the regulation of the JAK/STAT immune response pathway using protein engineeringimmune response pathway using protein engineering
Adam ChengAdam Cheng
Xiulin ShenXiulin Shen
Prof. Jiayu LiaoProf. Jiayu Liao
Department of BioengineeringDepartment of Bioengineering
IntroductionIntroduction
►1918 flu pandemic1918 flu pandemic► JAK/STAT pathwayJAK/STAT pathway►SUMO regulationSUMO regulation►Goals and StrategiesGoals and Strategies►MethodsMethods►ResultsResults►ConclusionConclusion
Spanish Flu Pandemic of Spanish Flu Pandemic of 19181918
http://en.wikipedia.org/wiki/Image:W_curve.png
JAK/STAT PathwayJAK/STAT Pathway
► Cytokines like interferon send Cytokines like interferon send messages throughout the bodymessages throughout the body
http://en.wikipedia.org/wiki/Image:Jakstat_pathway.svg
JAK/STAT PathwayJAK/STAT Pathway
► JAK phosphorylates the receptor and STATJAK phosphorylates the receptor and STAT► STAT dimer stimulates transcriptionSTAT dimer stimulates transcription
http://en.wikipedia.org/wiki/Image:Jakstat_pathway.svg
JAK/STAT PathwayJAK/STAT Pathway
►Outcomes from the JAK/STAT1 Pathway:Outcomes from the JAK/STAT1 Pathway: Immunoglobulin GImmunoglobulin G Protein Kinase R (PKR)Protein Kinase R (PKR) TH1 Differentiation (T-Cells)TH1 Differentiation (T-Cells)
http://en.wikipedia.org/wiki/Image:Jakstat_pathway.svg
SUMO regulationSUMO regulation
►SUMO protein cascadeSUMO protein cascade►PIAS and SENP functionPIAS and SENP function
ATP
E1 S E2 S
E3 (PIAS)
STAT
SENP
SUMO SUMO
SUMOSUMO
SUMO
STAT
GoalGoal
► Investigate signaling specificity by Investigate signaling specificity by analyzing SUMO’s interactions using a analyzing SUMO’s interactions using a new strategy of incorporating new strategy of incorporating unnatural amino acidsunnatural amino acids
►Understand the regulation Understand the regulation mechanisms of cytokine signaling mechanisms of cytokine signaling pathwayspathways
StrategyStrategy
►Mutate essential interactive amino Mutate essential interactive amino acids between SUMO and SENP to acids between SUMO and SENP to alanine so SENP cannot recognize alanine so SENP cannot recognize SUMOSUMO
►Mutate neighboring amino acids to p-Mutate neighboring amino acids to p-benzoyl-L-phenylalanine to benzoyl-L-phenylalanine to permanently link and fish out permanently link and fish out interaction partnersinteraction partners
MethodsMethods
►Mutations at/around these amino acidsMutations at/around these amino acids
Crosslinking unnatural amino Crosslinking unnatural amino acid:acid: pBpa – p-benzoyl-L-phenylalaninepBpa – p-benzoyl-L-phenylalanine
Wild Type Protein SynthesisWild Type Protein Synthesis
► Essential parts in protein synthesis:Essential parts in protein synthesis:
http://cropandsoil.oregonstate.edu/classes/css430/lecture%209-07/figure-08-01.JPG
http://www.bio.davidson.edu/courses/genomics/2005/Drysdale/molecular%20function.jpg
Incorporating pBpa Incorporating pBpa in vivoin vivo
►What is needed for unnatural amino What is needed for unnatural amino acid incorporation?acid incorporation? 1) Unnatural amino acid (pBpa)1) Unnatural amino acid (pBpa) 2) Engineered tRNA2) Engineered tRNA 3) Engineered Aminoacyl-tRNA synthetase3) Engineered Aminoacyl-tRNA synthetase
tRNA requirementstRNA requirements
► Codon mutated to Codon mutated to TAG (stop codon)TAG (stop codon)
► Unrecognized by Unrecognized by endogenous endogenous synthetasessynthetases
Aminoacyl-tRNA Synthetase Aminoacyl-tRNA Synthetase RequirementsRequirements
►Only aminoacylates the engineered Only aminoacylates the engineered tRNAtRNA
►Only accepts unnatural amino acid into Only accepts unnatural amino acid into active siteactive site
Methods: MutationMethods: Mutation
►Mutations through PCR Mutations through PCR primers/hybridizationprimers/hybridization
►Restriction digestion of DNARestriction digestion of DNA►Ligation to mammalian expression Ligation to mammalian expression
vectorvector
Methods: ExpressionMethods: Expression► Transfection of STAT1/alanine SUMO1/SENP2Transfection of STAT1/alanine SUMO1/SENP2► Lyse cells and extract proteinLyse cells and extract protein
http://www.amaxa.com/uploads/pics/StableTransfection_W.gif
Methods: ExpressionMethods: Expression► Transfection of STAT1/pBpa SUMO1/SENP2/TAG Transfection of STAT1/pBpa SUMO1/SENP2/TAG
tRNA/Aminoacyl-tRNA synthetasetRNA/Aminoacyl-tRNA synthetase► Add p-benzoyl-L-phenylalanine (1mM) 6h after Add p-benzoyl-L-phenylalanine (1mM) 6h after
transfectiontransfection
SUMO/SUMO/SENP SENP
complexcomplex
Methods: AnalysisMethods: Analysis► Analysis using Western BlotAnalysis using Western Blot
SUMO
STAT/SUMOSUMO/SENP
big
small
Insert protein hereInsert protein here
Results and Future WorkResults and Future Work
►All mutations are completeAll mutations are complete►Analyze using Western BlotAnalyze using Western Blot►Affirm results using another methodAffirm results using another method►Move techniques to related pathwaysMove techniques to related pathways
Anti-tumor p53 pathwayAnti-tumor p53 pathway
ConclusionConclusion
►A new amino acid incorporation A new amino acid incorporation strategy was applied strategy was applied
►Two types of SUMO mutations were Two types of SUMO mutations were generated to further the study of the generated to further the study of the JAK/STAT pathwayJAK/STAT pathway
►Results will benefit human healthResults will benefit human health
AcknowledgementsAcknowledgements
►Yang SongYang Song►Vicente NuVicente Nuññezez►Vipul MadaharVipul Madahar►Clarence PasionClarence Pasion►Xiulin ShenXiulin Shen►Department of BioengineeringDepartment of Bioengineering►Maria Franco-Aguilar and UCLEADSMaria Franco-Aguilar and UCLEADS►Dr. Victor Rodgers, Jill Brady, BRITEDr. Victor Rodgers, Jill Brady, BRITE
AckowledgementsAckowledgements
►Dr. Jiayu LiaoDr. Jiayu Liao
ReferencesReferences
► D. Schmidt and S. Miller. (2003) PIAS/SUMO: Partners in D. Schmidt and S. Miller. (2003) PIAS/SUMO: Partners in transcriptional regulation. Cell. Mol. Life. Sci. transcriptional regulation. Cell. Mol. Life. Sci. 6060:2561-2574:2561-2574
► Johnson, Erica S. (2004) Protein Modification by SUMO. Johnson, Erica S. (2004) Protein Modification by SUMO. Annu. Rev. Biochem. Annu. Rev. Biochem. 73:73: 355-382 355-382