kegg database resources
TRANSCRIPT
INTRODUCTION:Kyoto Encyclopedia of Genes and Genomes(KEGG):
“It is a collection of online databases dealing with genomes, enzymatic pathways, and biological chemicals.”
• Pathway database
• Record networks of molecule interaction
• Computerize current knowledge of biological systems & provide consistent annotations.
• Maintain gene catalogs for sequenced genomes.
• Maintain catalogs of chemical reactions in living cells by LIGAND.
• Provide new informatics technologies toward predicting biological systems and designing further expriments.
OBJECTIVES:
DATABASE OF KEGG
KEGG maintain 6 main databases:
KEGG Pathway(Atlas)
KEGG Genes
KEGG Genome
KEGG Ligand
KEGG BRITE
KEGG Cancer
KEGG PATHWAY
“KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks for:”
Metabolism
Genetic Information Processing
Environmental Information Processing
Cellular Processes
Organismal Systems
Human Diseases
Drug Development
KEGG: METABOLIC PATHWAY
KEGG GENES:
Collection of gene catalogs for all complete genomes
Four types:
MGENES (Meta Genomes)
VGENES (Viral Genome)
DGENES (Draft Genome)
EGENES (EST datasets)
KEGG GENOME
Collection of KEGG organisms which are the organisms with known complete genome sequence.
KEGG LIGAND:
KEGG BRITE:Collection of manually created hierarchical text files capturing functional hierarchies of various of biological objects, especially those represented as kegg object.
KEGG CANCER:
Applications:
Use to detect functionally related enzyme clusters.
Automatic detection of conserved gene clusters in multiple genomes by graph comparison.
Modeling & Stimulation
Browsing and retrieval of data
CONCLUSION:The Kyoto Encyclopedia of Genes and Genomes is a
vast library of information gathered from fully sequenced genomes, genes, proteins, pathways, and
chemical compounds pertaining to over a hundred different species of both prokaryotes and eukaryotes.