n.clarki ru30 l5b tetraloop n.clarki ru42 l5b tetraloop ...10.1186/1471-2148-6-39... · n. clarki...
TRANSCRIPT
WU
G
AACA
UUGU
AA
GUG
C
U
G
GC
CGC
A
U
G C
GC
UA
GA AA
UA
C
AA
UU
GUCUG
GAC
UU
AA
P6
5‘
3‘
3‘
5‘
L5b
NaGIR1 +NaHEG
NG498
U
G
AACA
UUGU
AA
GUG
C
G
CG
A
U
GC
G
A
AA
A
C
AA
UU
C
CG
G
GC
GU
C
P6
5‘ 3‘
L5b
NaGIR1 +NaHEG
N. pringsheimi 1D
G C
A U
N. clarki RU42N. clarki RU30
NG358
G
AACA
UUGU
AA
GUG
C
GAG
A
GC
G
A
AA
U
AA
UU
C
UG
G
AC
G C
P6
5‘ 3‘
L5b
NaGIR1 +NaHEG
G C
A U
NG647NG393
U A
U
GG
AG
L5b
N. italica AB-TF-3
G
AACA
UUGU
AA
GUG
C
GAG
A
GC
A
AA
UU
C
CG
G
GC
G A
P6
5‘ 3‘
NaGIR1 +NaHEG
G C
A U
U A
U
AU
A
A
L5b
N. philippinensis RJTM
G
AACA
UUGU
AA
GUG
C
GAG
A
GC
A
AA
UU
C
CG
G
GC
G A
P6
5‘ 3‘
NaGIR1 +NaHEG
G C
A U
U A
UA
G
AACA
UUGU
AA
GUG
C
A
A
GC
C
AA
UU
C
UG
G
AC
G C
P6
5‘ 3‘
NaGIR1 +NaHEG
G C
A U
U A
U
N. andersoni A2
GU
AUU
AC
C
L5b
U
C G
G CGC
G CUA
3‘ 5‘
C G
G CGC
G CUA
3‘ 5‘
C G
G CGC
G CUA
3‘ 5‘
C G
G CGC
G CUA
3‘ 5‘
C G
G CGC
G CUA
3‘ 5‘
C G
G
AACA
UUGU
AA
GUG
C
A
A
GC
C
AA
UU
C
UG
G
AC
G C
P6
5‘ 3‘
NaGIR1 +NaHEG
G C
A U
U A
U
N. jamiesoni T56E
AU
AUU
UA
A
L5b
U
G CGC
G CUA
3‘ 5‘
C G
G
AACA
UUGU
AA
GUG
C
A
GC
AA
UU
C
GG
G
CC
U A
P6
5‘ 3‘
NaGIR1 +NaHEG
G C
A U
U A
N. carteri NG055
AU
UU
U
A
L5b
U
A UGC
G CUA
3‘ 5‘
A U
U
AUAU
G
AACA
UUGU
AA
GUG
C
U
A
GC
U
AA
UU
UG
AC
U A
P6
5‘ 3‘
NaGIR1 +NaHEG
G C
A U
U G
U
N. martinezi NG872
AU
UAU
UA
U
L5b
A
A UGC
G CUA
3‘ 5‘
A U
N.sp. NG393 L5b tetraloop
N.sp. NG647 L5b tetraloop
N.pringsheimi 1D L5b tetraloop
N.italica AB-T-F3 L5b tetraloop
N.philippinensis RJTM L5b pentaloop
N.clarki RU30 L5b tetraloop
N.clarki RU42 L5b tetraloop
N.sp. NG358 L5b tetraloop
N.sp. NG498 L5b tetraloop
N.jamiesoni T56E L5b pentaloop
N.andersoni A2 L5b pentaloop
N.carteri NG055 L5b hexaloop
N.martinezi NG872 L5b pentaloop10 changes
100/100
100/100
100/100
100/100
100/99
-/-
100/100
100/90
100/87
-/-
GNRA-loop insertion
A
B