openup! bratislava preßburg pozsony /...
TRANSCRIPT
OpenUp! – Bratislava Preßburg Pozsony / 2014-02-20
Area of Interest
where and when we work
what we deal with
Objects
Basics
• Collections – Objects Size / Scalability small -> (medium) -> large
• Structure General Collection / separate Collections
• Coverage / Relevance / Activity local – regional – – > global scientific – historic – documentation closed / activ
Data
• Object based Collection(s) ”Data” vs. “Meta-Data”
• Data Capture / Availability / Usage / Resuse
• Maintenance / Sustainability
• Connection(s) / Networks Standards ISO / OGC / FOAF / DC (MODS) ABCD & DwC Archive / TCS
Workflows
• physical / virtual
• traditional Monographs – printed Annotation Refiling
• Web-based Systems Scratchpads / Edit Platform Cybertaxonomy
revisions and new taxonomic results
feedback/backlink to source
Workflow Diagram
Requirements System design
Costefficiency !! simple Interfaces for data capture ! webbased – no client-side Software-Installation !! Flexibility ! Datensecurity !! Availability over Internet !! Collabration !!
Content Specimens !! Literature !! Nomenclatur !!! & Taxonomy !!! & Classifikations !!!
Implementation Costefficiency !! Open Source Software
productive System MySQL / PHP / AJAX / JS / JQuery / DJATOKA Codebase SourceForge.Net / SVN - - > GITHub
webbased no (!) Client-Software-Installation
Implementation Flexibility ! direct Collaboration with IT-developer Ideas definition of Requirements quick Implementation Datasecurity !! separate Input- / Output- / Web- / Systems-Development-Server
2013 virtual infrastructure of Uni Vienna 5 Replications UNI Vienna ZID / NHM Vienna / Uni Graz / Uni Halle / BGBM
Implementation Display over Internet !! Free Specimens-/ObjectData visible In accordance with owner of data (institutions)
release to GBIF & EUROPEANA GZU, HAL, JE, KFTA, LW, LWS, W, WU participating GPI-JSTOR If available images for specimens are displayed over Internet
Implementation Collaboration!! basic consideration for Systems Development Specimens / Objects & User – institutionally separated Data are collected in „one pot“ used and delivered for various purposes
specimen names taxonomic backbone
monographs
revisions
floras
article-level
protologues geographic reference
actor / person / team institution / collection
type
external references (IPNI, IF, TPL, Tropicos; HUH; geonames; BHL / DOIs)
(G)UID
det. classifications
Datamodel simplified
menu
Virtual Herbaria
Institutions / private Herbaria 2000 2004 2005 2008 WU W GZU / GJO (+) HAL / JE / HerbDrogMus / HerbPilsl 2009 2011 2012 TGU MJG / KUFS BAK / BRNU / KFTA / LAGU / LW / LWKS / LWS / LZ / Univ. Tunceli Turkey 2013 GAT / HERZ / LECB / OLD / CHER / PRC B / data in preparation for move (~ 450.000 specimens records / 74.000 taxon names) interest ERE / KRA / NS / NSK / TB / TBI - Czech Museums, LI
Virtual Herbaria
Content / 20140220 Specimens 460.707 / 146.022 Images online Types 105.213 / typified Names 60.657 (Genera, Species and „Infraspecies“) scientific Names 286.260 / Genera 35.303 / Families 3.380 common Names 25.153 / 236 Languages nomenclatoral Authors 46257 (+ 44.217 combinations) Collectors and Teams 21.590 / 8.474 Literature References 26.561 Synonymies 179.001 (i.e. relation from one to another Taxon Name) since 2013 Classifications 2082 literature references - 99.963 child-parent relationships any level
Virtual Herbaria
Classifications Dalla Torre & Harms – Families and higher – complete
for single groups incl. infrafamilial taxa Annonaceae , Ebenaceae, Myristicaceae, Gramineae
Cronquist 1981 – angiosperms – complete Exkursionsflora von Österreich Ed. 3 (2008) – complete Ed. 1 & 2 Families and higher – complete Flora Iranica (180 vols.) – all accepted Taxa – complete APG + recent linear sequences Phytotaxa 2011 – complete Lycopods & Ferns & Gymnosperms – Phytotaxa 2011 – complete Soreng et al 20120808 – Gramineae – fertig Funk et al. 2009 – Compositae – fertig Annonaceae (showcase) – infrafamily level – genera and below work in progress Ebenaceae, Myristicaceae – work in progress Amaranthaceae, Chenopodiaceae, Portulacaceae (et al.) – work in progress http://jacq-dev.botanik.univie.ac.at/jacq-code/index.php?r=dataBrowser/classificationBrowser/index
Networks
• GBIF & national Nodes
• Global Plants Initiative – JSTOR
• EUROPEANA
– Typeregister esp. Lectotypisierungen (BHL / IPNI)
– OnlineFloras and taxonomic treatments (Monographs)
desiderata
Revision and Annotation
• conventional / by specialists on physical material
• new possibilities / by everybody (?) on records
ANNOSYS – BGBM
FILTERED PUSH – HU MIT http://wiki.filteredpush.org/wiki/ http://firuta.huh.harvard.edu/FP_SPNHC_2013_demo.webm
open questions
• Services persistent availability of external sources
caching vs. import (G)UIDs
• Data Complementation of various Data Sources
Forking and Desynchronization of Content GUIDs
points for discussion
Curation and Handling
• physical / virtual
• names / taxa (stable) labels / (volatile) concepts
• classifications used for filing (?)
• „removal“ of information from source
Paul Maas (U - WAG), Wilfried Morawetz
Lars Chatrou (WAG), Elke Döring, Bernhard von Hagen, Martin Röser (HAL), Charlie Charvis
(BM), Armando Urquiola (HPPR), Nelson Zamora (INB), Antonio Webber (UniAmaz), George
Schatz (MO), Bobbi Angell, Jacky Kallunki, Mike Nee (NY), David Johnson (OWU), Álvaro
Pérez (QCA), Adriana Lobão (RB), Renato Mello-Silva (SPB), Tom Wendt (TEX), Gerhard
Gottsberger (ULM), Magda Chanco (USM), Otto Huber (VEN)
Michael Malicky (LI), Fritz Ehrendorfer, Andrea Frosch-Radivo, Michael Hesse, Hanna
Schneeweiß, Tod Stuessy, Walter Till (WU), Anton Igersheim, Ernst Vitek, Bruno Wallnöfer,
Wolfgang Koller (W)
CURATORS A, ALCB, AAU, AMAZ, B, BAB, BH, BIGU, BM, BOLV, BP, BR, BSC, C, CAY, CEN, CHAPA, COAH, COL,
CR, CUVC, CUZ, CVRD, E, EAP, ECON, EHH, ENCB, F, FDG, FHO, FI, FT, G, GB, GH, GJO, GOET,
GUA, GUAT, GUAY, HAC, HAJB, HAL, HB, HPPR, HRB, HUA, HUEFS, IAN, IBGE, ICA, IJ, INB, INPA, IPA,
JAUM, JE, K, L, LAGU, LE, LI, LINN, LL, LOJA, LPB, LZ, M, MA, MBM, MEDEL, MEXU, MG, MICH, MO,
MY, NA, NY, OXF, P, PH, PI, PMA, PORT, PR, PRC, QCA, QCNE, R, RB, S, SCZ, SEL, SP, SPB, SPF,
STRI, TEFH, TEX, TFAV, TO, U, UB, UCWI, ULM, UPS, US, USM, USZ, UVAL, VEN, W, WAG, WIS,
WRSL, WU, XAL, Z, ZT
Financing & Support ÖAW, NHM Wien, Universität Wien, AW Mellon Foundation, GBIF, GBIF-AT, EU