problem 5: microfluidics math in industry workshop student mini-camp cgu 2009
DESCRIPTION
Problem 5: Microfluidics Math in Industry Workshop Student Mini-Camp CGU 2009. Abouali, Mohammad (SDSU) Chan, Ian (UBC) Kominiarczuk , Jakub (UCB) Matusik , Katie (UCSD) Salazar, Daniel (UCSB). Advisor: Michael Gratton. Part I:. Introduction. - PowerPoint PPT PresentationTRANSCRIPT
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Problem 5: MicrofluidicsMath in Industry Workshop
Student Mini-CampCGU 2009
Abouali, Mohammad (SDSU)Chan, Ian (UBC)
Kominiarczuk, Jakub (UCB)Matusik, Katie (UCSD)Salazar, Daniel (UCSB)
Advisor: Michael Gratton
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Introduction
• Micro-fluidics is the study of a thin layer of fluid, of the order of 100μm, at very low Reynold’s number (Re<<1) flow
• To drive the system, either electro-osmosis or a pressure gradient is used
• This system is used to test the effects of certain analytes or chemicals on the cell colonies
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Micro-fluidics in Drug Studies
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Problems and Motivations
• Due to diffusion and the cell reaction, the concentration of the analyte is changing across and along the channel
• Problems:– Maximize the number of the cell colonies placed
along the channels• What are the locations where the analyte
concentrations are constant?
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D
wuPePeclet Number:
2102
w
PeHTaylor-Aris Dispersion Condition:
Width: 1 cm
Length: 10 cm
Height: 100 µm
Dimensions of Channel and Taylor Dispersion
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Depth-wise Averaged Equation
2
2
2
2
xD
yD
xu eff
Governing Equation:
20,0|),( 0
wyxy y
€
∂ϕ∂x y,x=L
= 0,∂ϕ
∂yy=0,x
= 0,∂ϕ
∂yy=w,x
= 0
wyw
xy ox 2,|),( 0
Boundary Conditions:
22
2101
w
HPeDDeffwhere
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Two Channels
Concentration Velocity Vorticity
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Two Channel x=0mm
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Two Channel x=25mm
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Two Channel x=50mm
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Two Channel x=75mm
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Two Channel x=100mm
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Three Channels
Concentration Velocity Vorticity
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Three Channel x=0mm
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Three Channel x=25mm
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Three Channel x=50mm
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Three Channel x=75mm
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Three Channel x=100mm
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Width Changes Along the Channel
€
d = L − k x + c
L =10.0
k = 0.3681
c = −0.67712
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ModelEquation:
Uptake is assumed to be at a constant rate over the cell patch.
The reaction rate is chosen to be the maximum over the range of concentrations used
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Defining
Non-dimensionalize equation:
Boundary Conditions:
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Analytical solutionAn analytical solution can be found via Fourier transform:
Transformed equation:
Solutions:
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- Demand continuity and differentiability across boundary, and apply boundary conditions.
- Apply inverse Fourier transform
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- We are interested the wake far away from the cell patch:- The integral can be evaluated via Laplace’s method:
Taylor Expansion
For large x:
>>
φ
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Restoration is defined as
Restoration length:
Larger flow velocity enhances recovery??
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Numerical wake computation
• Advection-Diffusion-Reaction equation with reaction of type C0
• Domain size 10 x 60 to avoid effects of outflow boundary• Dirichlet boundary condition at inflow boundary, homogeneous
Neuman at sides and outflow• Solved using Higher Order Compact Finite Difference Method
(Kominiarczuk & Spotz)• Grid generated using TRIANGLE
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Numerical wake computation
• Choose a set of neighbors
• Compute optimal finite difference stencil for the PDE
• Solve the problem implicitly using SuperLU
• Method of 1 - 3 order, reduce locally due to C0 solution
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Conclusions from numerical experiments
• Diffusion is largely irrelevant as typical Peclet numbers are way above 1
• „Depth” of the wake depends on the relative strength of advection and reaction terms
• Because reaction rates vary wildly, we cannot conclude that it is safe to stack colonies along the lane given the constraints of the design
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Outstanding Issues:
• Will vertically averaging fail for small diffusivity?
• What are the limitations of the vertically averaging?
• Taylor dispersion?• Pattern of colony placements?• Realistic Reaction Model?• Effect of Boundaries along the device?
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References
• Y.C. Lam, X. Chen, C. Yang (2005) Depthwise averaging approach to cross-stream mixing in a pressure-driven michrochannel flow Microfluid Nanofluid 1: 218-226
• R.A. Vijayendran, F.S. Ligler, D.E. Leckband (1999) A Computational Reaction-Diffusion Model for the Analysis of Transport-Limited Kinetics Anal. Chem. 71, 5405-5412
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