rna医薬の新潮流 throughput rnai transfection speed, efficiency, reproducibility ↑↑ 3/14...
TRANSCRIPT
Yoshiji Fujita, Ph.D.President & CEO
CytoPathfinder Inc.(http://www.cytopathfinder.com)
(3rd March, 2006; Tokyo)
「事業化迫るRNA工学・RNA医薬、その先端と課題」
RNA医薬の新潮流
Current Status of RNAi MedicinesNeuronal Diseases 11Virus Infections 22Cancer 7Opthalmology 4Infectious Diseases 1Immunodeficiency 5GI & Metabolic Diseases 4
Total 54
Pre-clinical 51 Phase – I 3
As of 2004 ; Some are now in P-II and/or P-II Completed
AlnylamAlzeheimer’s Autoimmune Disease
Obesity, Lipidosis, Hepatitis
Neuropathic Pain
Asthma, Chronic Obstacle Pheumonia
Discovery Pre-Clinical Phase-I
AMD (VEGF-siRNA)
Terminated (Aug. 2005)
Merck (Hybridon)
✓Huntington’s α-SynucleinMayo Clinic
Cancer, InflammationMerck, IsisWO OI/36646 2001
Genesis R&D Allergy (IND in 2005)
Atugen Diabetes (IND in ‘05/’06)
Sirna AMD (VEGFR-1)Phase I (〜 ‘04)
Lilly
Cancer (VEGFR-1)Lilly
CytRx Diabetes, Obesity
Acuity Phama. AMD (Cand5 (VEGF) )Phase I (〜 ‘04)
ALS (IND ’05 scheduled)
Nucleonics HBV (Novosom)HCV (Novosom)
IC-Vec HBV, HCV
Many companies are targeting viral infection diseases
Phase II (’06)
Impacts of RNAi Technologies on Drug Discovery1. Target Identification & Validation Process
Central Dogma Changed – Direct Forward
2. Quick Move to Clinical Trial when Target Validated
* Elimination of Redundant Works !* Cost / Time Saving !
Less than 2 Years
* High Success Rate !* Cost / Time Saving !* Estimated To Shortening ca. 4 Years Till Launching Products
3. RNAi Medicines = Assumed to be ChemicalsNo Need Troublesome QC Like AntibodyCombination of 4 Nucleotides Fits For Every Therapeutic NCEs* Production ; Simple & Multi-Purpose Use
4. Pharmacogenomics = Simple (Focused Target)
Barriers to Tackle RNAi Medicine
1. Cost of Goods To be Resolved in Future
2. Very Unstable in Serum / Plasma Need DDS* Half-Life Controllable from Minutes to Hours / Days
* Need Cell / Tissue-Specific Delivery
3. Complicated IP Situation* Who Owns / Wins What ? What Claims Granted ?
* Need More Methods
* Applicable Therapeutic Area vs. Reimbursement
Multiple Phenotypic Readouts
Cellular Functions
Validated Target
Target molecules
Conventional Approach
Disease
Hard to prioritize !
Series of experiments of cDNAcloning, protein expression and establishment of assay (e.g. Enzyme, Receptor Assay), followed by HTS.
Apoptosis / NecrosisProliferation / ShapeAdhesion / AggregationSignaling Profile Cytokine ProfileSecretion
High Throughput RNAi Transfection
Speed, Efficiency, Reproducibility ↑↑
3/14
Hits
RNAi MedicineLow Molecular Medicine
Significant Improvement in
TargetID
TargetVal
Lead Opt
Pre-Clinical
Phase III
Approval & Launch
Phase II
Phase I
HTS & Lead IDDisease
Drug Discovery Process
Project Number 57 36 / 22 14 8 / 4.5 / 2 1
siRNA High Success RateTime (M) 24 24 24 73 8
siRNA < 24 Months
Power of TFA SystemEvidences !
At Research Institute of Cell Engineering / AIST-Amagasaki
(TFA = Transfection Array)
1. Compound Profiling of Unknown Target (Cancer)
2. Identify Molecules Responsible For Cellular Events (Neurite Extension)
3. Pathway Analysis
4. Sequential Analysis Of Cellular Events
Inkjet printingInkjet printingRNAiRNAi x Reporterx Reporter Pour cellPour cell suspension suspension into dishinto dish
CultivationCultivation
ObserObservvationation
PathwayPathway analysanalysiiss
Co-transfection array① siRNA and reporter are co-transfected
Putting different kinds of siRNA on a spot allowssimultaneous knock-down of multiple targets
② High screeningefficiency usingcellular functionalassay
③ Unique analysis algorithm
About Transfection Array System
The principle of acceleration of solid-phase transfection
Nuclear
Narrow space
Cell membrane
1) The accelerator activates phagocytosisof DNA/polymers.
2) DNA may easily access to the nuclear because the space between cell membrane and nuclear membrane is closed very much.
DNA
Cell membrane
Nuclearmembrane
cell
Nu
Accelerator DNA/polymer
Glass slide
H2OH2O
H2O H2O H2OH2O
Merit 2:Solid-phase TransfectionHeighten throughput, lower in cost of RNAi
8/14
Pre-incubationOf cells
24 hr(critical)
Inoculation of cells
RNAi+transfection reagents
Added after 5 min.
Exchangemedium
After 1 hr(critical),change medium
48 – 72 hr incubation
Inoculation of cells RNAi layer
48 – 72 hr incubation
【Solid-phase transfection】【Conventional transfection】
Both transfection and incubation are preformed simultaneously.
Functional AssayFluorescence reporterChromogenic reporter Immuno-stainingDNA micro-arrayProtein-chip
All kinds of wells (96-384) and arrays are available.
High ThroughputMinimizing cost and maximizing throughput of RNAi by solid-phase transfection
Advantages over Conventional MethodCurrent problems of RNAi technology and our solutions
① Transfection Efficiency 10-20 times increase
Average in optimal conditions = 20%; Only 1-2% for difficult cell types
Average = 60-80%; 40% in case of difficult cell types
② Throughput 100 times increase
Manual process due to multiple-step and complicated operation
Accelerator
Solid-phase Transfection Complete automation by
single-step operation(Solution volume: milliliter nano-liter (1/1000,000)
③ Analysis of Cellular-
Limited to specific analysis per function, induced per stimuli (RNAi, drug candidate, etc.)
Parallel and Real-time Monitoring Analysis of various intra-cellular functions
AlgorithmEvent InformationFirst in the world to perform high-level functional analysis
0
GFP
inte
nsity
/mm
2 10
8
5.0
2.5
10
7.5
HEK293 HeLa NIH3T3 HepG2 hMSCs
easy difficult
Conventional MedthodCytoPathfinder’s Method
Improvement in Transfection efficiency using CytoPathfinder’sproprietary promoters
Human Cells
Origin TransfectionEfficiency (%)
hMSC Mesenchymal 40Stem Cell
HepG2 Hepatic Cancer 80
MCF7 Breast Cancer 80
U251 Glioma 80
SHSY5Y Neuroblastoma 60
NTERA-2 Embryonic 80Carcinoma
High Transfection Efficiency
siRNA TFACell
Target Molecules
Representatives
siRNAs➀ ➁ ③ ④ ⑤
20〜30 siRNAs/Gene
Prioritize the most effective sequences
siRNA ③DDS
In vitro, in vivo
Drugs
SNPs (Allele, Frequency, Ethnics…) Pharmacogenomics
Pipelines
Efficacy; Responder / Non-Responder
Proteins (Biological Functions) Membrane Protein Crystallization
Collaborations- Academia- Pharmaceuticals Comp.
Aptamers
Compound Profiling
Rationale Drug CombinationMechanism Existing Drugs
Low Molecular Drug
Drug Delivery System is The KeyTo Succeed In RNAi Medicine
* Liposome / Cubosome
* Virus Vector
* Chemical Modification
- PEG- Cholesterol
NIH Sets Aside $5.6 Million to Fund RNAi Research Programs in 2006 8/12/2005
The cash, which is open to US-based institutions only, is aimed at helping researchers improve their understanding of the uptake and processing of RNAi compounds by target tissues; assess stability, half-life, and off-target effects of these agents in target tissues; and determine optimal delivery methods for RNAi molecule uptake by the target tissues.
CytoPathfinder’s Endeavor For CubosomeType II Cubic Liquid Crystal
Water ChannelΦ〜5 nm
Φ〜100 nm
Proprietary Lipid ; 55〜65%Water ; 45〜35%
Characteristics compared with Liposome;1. Superior strength against mechanical stress to preserve structure
2. Larger lipid/water-surface per unit volume (~500m2/g lipid )Incorporating larger amount of chemicals (e.g. proteins of ca. 500KDa)
3. Controlled release / reactions through water channel size
Molecular Shape and Liquid Crystals
Water Continuous
Alkyl-ChainContinuous
Hexagonal Liquid Crystal (HI)
Lamellar Liquid Crystal (La)
Cubic Liquid Crystal
Revrs. Hexagonal Liquid Crystal (HII)
キュービック液晶
他の相領域間の狭い濃度範囲に存在光学的に透明等方性で複屈折性を示さない結晶類似の構造、機械的に強い
Complicated IP SituationDespite New Patents on the Horizon, RNAiIP Field Still Muddy; Is Licensing Always an Option? [1/26/2006]
In 2005, RNAi Science Advances and Big Pharma Takes Notice[1/5/2006] ・・・・・ But,
Both Alnylam Pharmaceuticals and Sirna Therapeutics said this week that they have gotten word from the US Patent and Trademark Office that certain of their IP would be issued as patents — yet questions about the RNAi IP landscape remain.
Qiagen
Contents Suppliers Market Size = $ Ca. 500 MGrowth = Ca. 10% / YearConsumables market ; sample prep, RNAi, microRNA, gene expression, array products
Sigma-Aldrich
- Optimizing G/C Content
- Off-target silencing effects- Contamination
- Whole Genome (> 20K siRNAs)
Ambion (ABI)Dharmacon(Fisher Scientific)
Invitrogen
Validation ! Cost ! Reproducibility !
Cenix GenOway
Alnylam Acuity CytRxSirnaPharmaceuticals Therapeutics Corp.Pharmaceutical
Pharma. Co.
Bayer, Schering AGNovartis, Merck Allergan, Lilly
Phase II / DB macular edemaCompleted phase II / age-related macular degeneration
AstraZeneca Alcon
?
Non-Profit Consortium
RNAi Therapeutic Users
Three IP Barriers for RNAi Drug Discovery
Research Tool- Target Identify- Target Validation- Pathway Analysis- Compound Profiling- Multi Well / Array (TFA)
siRNA, miRNA, shRNA…
低分子医薬
DDS- Liposome / Cubosome- Chem. Modification(Chol. PEG etc.)
- Viral Vector
Therapeutic UseAlnylam (2002-226; 30 IPs)
Sirna (213 IP-Hits)
CytRx (56 IP-Hits)(18〜23 Nucleotides)
EP1144623 (〜25 Nucleotides)EP1214945 (15〜49 Nucleotides)
核酸医薬
Optimal Nuclear Sequence
Discovery Target
RNAi technology is truly “Destructive” to force changes in whole drug discovery process ;
CONCLUSION
RNAi medicine is direct forward outcomes but is just one exit !Low molecular, existing & under-development drugs can be re-profiled for better and safer uses (Alternative indication as well)