work report 陈冰11.11.23 修订版
TRANSCRIPT
E. coli K-12中 3- 羟基苯丙酸转运蛋白研究
报告人:陈 冰指导老师:周宁一研究员
2011.11.23
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中科院武汉病毒所 2009级硕士中期报告
Background
3-(3-hydroxyphenyl)propionate
(3-HPP)
From the degradation of lignin and other aromatic constituents of plants
COOH
OH
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Eduardo Díaz.,et al.2001. Biodegradation of Aromatic Compounds by Escherichia coli . Microbiology and Molecular Biology Reviews. p. 523-569, Vol. 65, No. 4
Pathway for the catabolism of 3-HPP in E.coli K-12
3/17
Background
Transporter Classification system, TC
Transporters
Class
2
Subclass
2.A
Family
2.A.1
Subfamily 2.A.1.15
Electrochemical potential-driven transporters
Porters: uniporters, symporters and antiporters
The Major Facilitator Superfamily (MFS)
(Up to date :69)
The Aromatic Acid:H+ Symporter (AAHS) Family
4/17
Background
The Aromatic Acid:H+ Symporter (AAHS) Family:
MhpT : 3-Hydroxyphenyl propionate porter
PcaK : 4-Hydroxybenzoate/protocatachuate porter
TfdK : 2,4-Dichlorophenoxyacetate porter
BenK : Benzoate porter
GenK : gentisate porter
MhbT : 3-Hydroxybenzoate porter
VanK : Vanillate porter
MucK : cis,cis-muconate porter
NiaP or YceI : The putative niacin/nicotinamide uptake porter
Orf1 : Probable 1-hydroxy-2-naphthoate transporter
MmlH : Probable 4-methylmuconolactone transporterUp to date:11
5/17
Background
E.coli K-12 W3110 can grow with 3-HPP as sole carbon source
The growth experiments of E.coli. K12 W3110
A: MM+MnSO4+E.coli K-12
B: MM+MnSO4+E.coli K-12+glycerol
C: MM+MnSO4+E.coli K-12+3-HPP (the final concertration:2mM)
D: MM+MnSO4+E.coli K-12+glucose
E: MM+MnSO4+E.coli K-12+glycerol+3-HPP
F: MM+MnSO4+E.coli K12+glycerol+glucose
Results
6/17
MhpT-GFP is localized in the membrane
B
A
A: negative control, GFP -BL21 B: W3110-MhpT-GFP-BL21
A
Results
MhpT is a transmembrane protein by TMHMM topology prediction
A B
7/17
Knockout of mhpT in Escherichia coli K-12
λ Red recombination system in Escherichia coli gene modification
Results
Two plasmids involved in the λ Red recombination system
8/17
A simple gene disruption strategy
H1 and H2 refer to the homology extensions or regions.P1 and P2 refer to priming sites
Kirill A.,et al.2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.PNAS.6640-6645,vol.97
Results
9/17
Verification of mhpT knock-out mutants
W3110 wild typeW3110△ mhpT::kan
Results
10/17
Growth of Escherichia coli K-12 W3110 and mhpT mutant
Medium: Mineral medium (pH=7.0)
Results
11/17
Growth of Escherichia coli K-12 W3110 and mhpT mutant
Medium: Na2HPO4/KH2PO4 buffer(pH=8.2)
pH=8.2
Results
12/17
Construction of vectors to express MhpT
mhpT
Results
13/17
Results
14/17
wild typemutant
(mhpT-T31)
The growth curves of four different strains
mutant(T31)mutant
Site-directed mutagenesis of MhpT
Glu-27-Ala
Glu-27-Asp
Asp-75-Glu
Ala-272-His
Lys-276-Asp
Results
15/17
Future work:
1.Uptake of the 14C-labelled 3-HPP in the wild type, mutant, overexpression and complementary strains 2. Activity analyses on MhpA to 3-HPP as initial substract in the wild type, mutant, overexpression and complementary strains
3. Detection of mhpT transcription by real-time PCR
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Thank you!
17/17