1. 1. Microbiomes in Food and Agriculture IFAL October 19, 2015 Jonathan A. Eisen @phylogenomics University of California, Davis
2. 2. A Life Long Obsession
3. 3. The Rise of the Microbiome
4. 4. 0 1000 2000 3000 4000 00 01 02 03 04 05 06 07 08 09 10 11 12 13 Pubmed Microbiome Hits The Rise of the Microbiome
5. 5. 0 1000 2000 3000 4000 00 01 02 03 04 05 06 07 08 09 10 11 12 13 Pubmed Microbiome Hits The Rise of the Microbiome
6. 6. 0 1000 2000 3000 4000 00 01 02 03 04 05 06 07 08 09 10 11 12 13 Pubmed Microbiome Hits The Rise of the Microbiome
7. 7. 0 1000 2000 3000 4000 00 01 02 03 04 05 06 07 08 09 10 11 12 13 Pubmed Microbiome Hits The Rise of the Microbiome
8. 8. microBIOME or microbiOME? microbi-OME collection of genomes of microbes from a community (emphasis on OME) micro-BIOME a community of microbes (emphasis on BIOME) see http://tinyurl.com/definemicrobiome
9. 9. Why Now I: Appreciation of Microbial Diversity
10. 10. Why Now I: Appreciation of Microbial Diversity
11. 11. Why Now I: Appreciation of Microbial Diversity Diversity of Form
12. 12. Why Now I: Appreciation of Microbial Diversity Diversity of Form Phylogenetic Diversity
13. 13. Why Now I: Appreciation of Microbial Diversity Functional Diversity Diversity of Form Phylogenetic Diversity
14. 14. Why Now I: Appreciation of Microbial Diversity Functional Diversity Diversity of Form Phylogenetic Diversity MICROBES RUN THE PLANET
15. 15. Why Now II: Post Genome Blues
16. 16. Why Now II: Post Genome Blues Overselling the Human Genome?
17. 17. Why Now II: Post Genome Blues Transcriptome Overselling the Human Genome?
18. 18. Why Now II: Post Genome Blues Transcriptome Epigenome Overselling the Human Genome?
19. 19. Why Now II: Post Genome Blues Transcriptome VariomeEpigenome Overselling the Human Genome?
20. 20. Why Now II: Post Genome Blues The Microbiome Transcriptome VariomeEpigenome Overselling the Human Genome?
21. 21. Why Now III: Sequencing Has Gone Crazy
22. 22. Why Now III: Culture Independent Studies
23. 23. Why Now III: Culture Independent Studies
24. 24. Observation Why Now III: Culture Independent Studies
25. 25. Culturing Observation Why Now III: Culture Independent Studies
26. 26. Culturing Observation CountCount Why Now III: Culture Independent Studies
27. 27.