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Bridging the divide between Laboratory & Classroom Stacie L. Bumgarner, Ph.D. MIT Biology Department & MIT Office of Educational Innovation and Technology (OEIT) st ar Software Tools for Academics & Researchers

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Software Tools for Academics & Researchers : Deeper Learning through bridging the divide between the research laboratory and the classroom using interactive technology.

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Page 1: MIT STAR

Bridging the divide between Laboratory & Classroom

Stacie L. Bumgarner, Ph.D.

MIT Biology Department&

MIT Office of Educational Innovationand Technology (OEIT)

star Software Tools forAcademics & Researchers

Page 2: MIT STAR

10% of what they hear

30% of what they see

60% of what they hear & see

80% of what they hear, see, & do

100% of what they hear, see, do, smell, feel, taste…

Students learn…

By Ronald A. BerkProfessors are from Mars. Students are from Snickers.

Page 3: MIT STAR

Expose students to the discovery aspect of research

and to the processes of doing research.

The Goal:

Page 4: MIT STAR

Expose students to the discovery aspect of research

and to the processes of doing research.

The Goal:

Bridge the divide between the research laboratory and

the classroom using interactive technology.

The Challenge:

Page 5: MIT STAR

MIT Faculty & Research Scientists

Dean of Undergraduate Education

Office of Educational Innovation & Technology (OEIT)

star Software Tools forAcademics & Researchers

Who are we?

Designing interactive educational software toolsfor use INSIDE & OUTSIDE of classrooms

What are we doing?

Page 6: MIT STAR

star Software Tools forAcademics & Researchers

StarGenetics

http://web.mit.edu/[email protected]

StarBiochem

protein visualization

genetic cross simulator

StarOrf

gene finder

StarMolSim

materials modeling

StarHydro

hydrology visualization

StarHPC

parallel programming

Page 7: MIT STAR

1 Educational goals

2 Design process

3 Functionality

4 Access

star Software Tools forAcademics & Researchers

Biology Tools

Page 8: MIT STAR

Teaching protein structure and function in a classroom

StarBiochem: protein structure explorer

Teaching experimental design & data interpretation without a laboratory

StarGenetics: virtual genetics lab

Educational goals

Page 9: MIT STAR

Collaborations between MIT faculty & OEIT

StarBiochem Professor Graham WalkerIntroductory Biology

Series

StarGenetics Professor Chris KaiserGeneticsGraduate Student

Bridge Program

Design Process

Page 10: MIT STAR

Star software answers limitations of other available software:

Unfamiliar jargon

Not user-friendly

Design Process

Research

Windows functionality only

Tutorials with limited views/manipulations

Not customizable for content chosen by instructor

Educational

Page 11: MIT STAR

1 Educational goals

2 Design process

3 Functionality

4 Access

star Software Tools forAcademics & Researchers

Biology Tools

Page 12: MIT STAR

StarBiochem protein structure explorer

Page 13: MIT STAR

Website: http://web.mit.edu/star/biochem/

Platform independent (Windows, Mac, Unix/Linux)

Designed for educational purposes with students in mind

Can import >54,000 Protein Data Bank structures

StarBiochem protein structure explorer

Page 14: MIT STAR

StarGenetics genetic cross simulator

Page 15: MIT STAR

StarGenetics genetic cross simulator

Website: http://web.mit.edu/star/genetics/

Platform independent (Windows, Mac, Unix/Linux)

Simulates actual experimental process

Provides affordable, meaningful virtual laboratory component when resources are limited

Fast! In minutes, simulates realistic experiments that would require months to perform with live organisms

Organisms: fruit flies, yeast, bacteria (~2011)

Page 16: MIT STAR

Access

StarBiochem http://web.mit.edu/star/biochem

StarGenetics http://web.mit.edu/star/genetics

Software & Exercises

Available free of chargeon the internet

Page 17: MIT STAR

Video tutorial

Access

User Manual

Exercises

StarBiochem http://web.mit.edu/star/biochem

StarGenetics http://web.mit.edu/star/genetics

Page 18: MIT STAR

User Statistics: Worldwide

Total Visits: 26,694

star Software Tools forAcademics & Researchers

for Time Period: October 18, 2009 – October 18 , 2010

Continent Visits Americas

20,491Europe3715Asia2040Oceana289Africa131Antarctica28

Page 19: MIT STAR

User Statistics: Haitistar Software Tools for

Academics & Researchers

for Time Period: October 18, 2009 – October 18 , 2010

Country Visits Puerto Rico108Dom Repub 6Cuba6Trin Tobago 3Haiti2Dominica1Jamaica1Barbados1Bahamas1

Page 20: MIT STAR

Example Users:

Undergraduate studentsIntroductory Biology (MIT, Howard University)Introductory Biology Lab (Brandeis University)Introductory Genetics & Lab (Suffolk University)

High school studentsMIT Museum (MIT)High School Outreach Program (Broad Institute)High School Fieldtrips (MIT Biology Department)

Page 21: MIT STAR

AcknowledgementsStar Team@OEIT

Lourdes AlemanSara Bonner

Stacie BumgarnerRocklyn Clarke

Ivan CerajJustin Riley

Chuck Shubert

Biology DepartmentChris Kaiser

Graham WalkerDiviya Sinha

OEITVijay Kumar

Molly Ruggles

CollaboratorsMelissa Kosinski-Collins

Megan RokopKathy Vandiver

[email protected]

Collaborating InstitutionsBrandeis UniversityBroad Institute Outreach ProgramHoward UniversityMIT MuseumSuffolk UniversityTufts University

Outside FundingHHMIDavis Educational Foundation

http://web.mit.edu/star