role of hydrophobic effect in the salt-induced dimerization of bovine β-lactoglobulin at ph 3
TRANSCRIPT
Role of Hydrophobic Effect in the Salt-Induced Dimerization ofBovine b-Lactoglobulin at pH 3
Giuseppe GrazianoDipartimento di Scienze Biologiche ed Ambientali, Universita del Sannio, Via Port’Arsa 11, 82100 Benevento, Italy
Received 7 January 2009; revised 12 February 2009; accepted 16 February 2009
Published online 24 February 2009 in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/bip.21174
This article was originally published online as an accepted
preprint. The ‘‘Published Online’’date corresponds to the preprint
version. You can request a copy of the preprint by emailing the
Biopolymers editorial office at [email protected]
INTRODUCTION
Bovine b-lactoglobulin, b-LG, very abundant in cow’s
milk, is a globular protein of 162 residues,1 with two
disulfide bridges (Cys66-Cys160 and Cys106-
Cys119), and a free SH group, Cys121. At neutral pH
the protein exists as a dimer, whose structure has
been solved by means of X-ray diffraction at 1.8 A resolu-
tion2 (PDB code, 1BEB). The secondary structure of each
monomer is dominated by the presence of nine b-strands
(labeled A-I) and one a-helix at the C-terminal end of the
molecule. The eight A-H b-strands constitute a b-barrel with
an interior cavity, suitable to host hydrophobic ligands such
as retinol.3 The dimeric structure is stabilized by a set of
interactions occurring across the interface, characterized by
the formation of an antiparallel two-stranded b-sheet for the
packing of the I strands of the two monomers.2 In addition,
there is the formation of several H-bonds between the resi-
dues of the external loop connecting the A and B strands of
each monomer; so, for instance, the side-chain of Asp33 of
one monomer is H-bonded to the main-chain NH group of
Ala34 of the other monomer, and vice-versa.2 It is worth not-
ing that the protein exists as a monomer at pH 3.0 and
below, and its monomeric structure (PDB code, 1DV9),
solved via NMR techniques, is very close to that of each sub-
unit of the dimer at neutral pH (i.e., the root-mean-square
deviation for backbone atoms amounts to 1.3 A).4
The monomer-dimer equilibrium of b-LG is characterized
by a dimerization constant KD 5 5 � 104 M21 at neutral pH,5
that is not a large value; thus several features of the process
have been studied in detail. It has been shown that modifica-
tion of the free SH group of Cys121, which is entirely buried
by the C-terminal a-helix, favors dissociation into mono-
mers.5,6 In addition, it was found that, while the b-LG mono-
mer is the stable species at pH 3.0 and low salt concentra-
tions, the dimer becomes the dominant species on increasing
salt concentration.7 In particular, Goto and coworkers,8 by
means of sedimentation equilibrium measurements, charac-
terized the effect of NaCl, NaClO4 and GuHCl on the dimer-
This article is dedicated to professor Lelio Mazzarella in theoccasion of his 70th birthday, who has become a model for thedevotion to science and work.
Role of Hydrophobic Effect in the Salt-Induced Dimerization ofBovine b-Lactoglobulin at pH 3
Correspondence to: Giuseppe Graziano; e-mail: [email protected]
ABSTRACT:
b-Lactoglobulin is a dimeric protein around neutral pH,
but the monomer becomes the dominant species at pH 3.0
due to strong electrostatic repulsions between the positively
charged molecules. It has been found that the addition of
salts to water at pH 3.0 favors the dimerization of b-
lactoglobulin. In particular, the dimer is the dominant
species at 1M NaCl, 1M GuHCl, and 25 mM NaClO4
[Sakurai, Oobatake, and Goto, Protein Sci 2001, 10, 2325–
2335]. The effect of these salt conditions on the strength of
hydrophobic interaction has been calculated by means of a
simple but physically sound approach. The obtained
estimates indicate that: (a) the hydrophobic interaction
contribution is strengthened in 1M NaCl and 1M GuHCl
with respect to pure water, but not in 25 mM NaClO4; (b)
anion binding on the positively charged surface of protein
molecules has to be the major factor for the salt-induced
dimerization. # 2009 Wiley Periodicals, Inc. Biopolymers
91: 1182–1188, 2009.
Keywords: dimerization; hydrophobic interaction; cavity
creation; water accessible surface area; anion binding
VVC 2009 Wiley Periodicals, Inc.
1182 Biopolymers Volume 91 / Number 12
ization process of b-LG at pH 3.0, 20 mM glycine-HCl buffer.
At 208C, they found that the dimerization constant KD 5 1.8
3 105M21 in 1M NaCl, 6.0 3 105M21 in 1M GuHCl, and
2.1 3 106M21 in 25 mM NaClO4. These values indicate that:
(a) the dimer of b-LG is largely the dominant species at the
above salt concentrations; (b) GuHCl, notwithstanding its
denaturing action on globular proteins, at 1M concentration,
stabilizes the dimer to the same extent as NaCl; (c) NaClO4
proves to be much more effective than NaCl and GuHCl in
stabilizing the dimer.8
First of all it is necessary to provide an explanation for the
effect of pH on the monomer-dimer equilibrium of b-LG,
and secondly to develop an analysis of the effect of salts. b-
LG is an acid protein, with an isoelectric point of 4.6; on the
basis of amino acid sequence, it should possess a net charge
equal to 120 at pH 2.0, and 29 at pH 7.5. This means that,
on decreasing the solution pH from neutrality, two b-LG
monomers, having an increasing net positive charge, experi-
ence repulsive interactions that lead to dimer dissociation. In
addition, the twin salt-bridges at the dimer interface,
between the side-chains of Asp33 of one monomer and
Arg40 of the other monomer, could not exist at pH 3.0
because the carboxylic groups are normally protonated at
this pH value.
For the salt effects Goto and coworkers8 provided the fol-
lowing qualitative rationalization: (a) the anions of the salts,
Cl2 and ClO42, bind to the positively charged surface of b-LG
monomers, shielding the electrostatic repulsion among the
protein molecules; (b) in these conditions the hydrophobic
effect can promote the formation of dimers, whose specific
structure is determined by the feasible interactions across the
potential interface; (c) the anion binding mechanism is sup-
ported by the stronger effectiveness of ClO42 with respect to
Cl2 because this is in line with the electroselectivity series to-
ward anion-exchange resins. Since no quantitative estimate has
been provided, I have decided to try to develop a quantitative
analysis of the extra hydrophobic effect contribution due to the
presence of salts in order to test the validity of the rationaliza-
tion proposed by Goto and coworkers.
THEORETICAL BASISThe process of bringing two nonpolar solutes from a fixed
position at infinite separation to a fixed position at contact
distance in water or aqueous solution, at constant tempera-
ture and pressure, can be considered as the prototype hydro-
phobic effect, and was termed by Ben-Naim9 a pairwise
hydrophobic interaction, HI. I think that the dimerization of
b-LG can be treated as a special case of pairwise hydrophobic
interaction. According to classical statistical mechanics,9 the
associated Gibbs energy change can be separated in two
terms:
DGðHIÞ ¼ Eaðm-mÞ þ dGðHIÞ ð1Þ
where Ea(m-m) is the direct monomer-monomer interaction
energy, and does not depend on the presence of the solvent
and its nature; dG(HI) is the indirect part of the reversible
work to carry out the process, and accounts for the specific
features of the solvent in which dimerization occurs. Evalua-
tion of the dependence of DG(HI) upon the distance between
the two solute molecules gives rise to what is usually called
the potential of mean force. A general relationship connects
dG(HI) to the Ben-Naim standard solvation Gibbs energy of
dimer and monomer9:
dGðHIÞ ¼ DG�ðdimerÞ � 2 � DG�ðmonomerÞ ð2Þ
where DG� represents the Gibbs energy change associated
with the transfer of a solute molecule from a fixed position
in the ideal gas phase to a fixed position in a solvent, at con-
stant temperature and pressure.10 A rigorous and straightfor-
ward application of statistical mechanics allows the exact
splitting of DG� in two contributions11,12:
DG� ¼ DGc þ DGa ð3Þ
where DGc is the reversible work to create at a fixed position
in a solvent a cavity suitable to host the solute molecule, and
DGa is the reversible work to turn on the attractive interac-
tions between the solute molecule inserted in the cavity and
all the surrounding solvent molecules. It is worth noting that
Eq. (3) does not imply the additivity of independent contri-
butions: the turning on of attractive solute-solvent interac-
tions is conditional to the creation of a suitable cavity.12 By
using Eq. (3) in the definition of dG(HI), one obtains:
dGðHIÞ ¼ ½DGcðdimerÞ � 2 � DGcðmonomerÞ�þ ½DGaðdimerÞ � 2 � DGaðmonomerÞ� ð4Þ
The attractive interactions of a monomer with the sur-
rounding solvent molecules are likely to be proportional to the
accessible surface area13 of the monomer itself. Dimer forma-
tion causes a reduction in the total accessible surface area and
so a reduction in the total number of attractive interactions
with the surrounding solvent molecules. This means that the
second square bracket in Eq. (4) cannot be neglected in gen-
eral. However, the reduction in water accessible surface area
upon b-LG dimerization is a small fraction of the total; the
native monomeric form of b-LG has WASA 5 8100 A2,
whereas the DWASA upon dimerization amounts to 600 A2
Dimerization of Bovine b-Lactoglobulin 1183
Biopolymers
per monomer8 (i.e., the latter is 7.4% of the total). In this case,
it should be a reliable approximation to transform Eq. (4) in:
dGðHIÞ ffi DGcðdimerÞ � 2 � DGcðmonomerÞ ð5Þ
Equation (5) indicates that a quantitative estimate of
hydrophobic interaction can be obtained from the calcula-
tion of DGc in water or aqueous solution as a function of cav-
ity size and shape (note that DGc cannot be determined by
means of experimental measurements, it has to be calculated
by means of theoretical relationships or computer simula-
tions). The latter is a very difficult task especially for a large
solute such as a globular protein, and so some general
considerations are in order.
The creation of a cavity, at constant temperature, pressure
and number of particles, at a fixed position in a liquid, causes
an increase of the average volume of the system by a quantity
equal to the cavity volume. However, a region around the
cavity surface becomes inevitably inaccessible to solvent mol-
ecules because particles cannot overlap one another, and the
cavity region has to be void.14 One speaks of solvent excluded
volume effect because the centre of each solvent particle can-
not enter the shell region between the cavity van der Waals
surface and the solvent accessible surface of the cavity.
Clearly, the solvent excluded volume of a given cavity (that
will host a real solute molecule) cannot be described by the
sum of two-body interactions, because it is the consequence
of many-body interactions (i.e., the additivity principle does
not hold, or, more correctly, it would be meaningless in this
matter). In the case of a spherical cavity in water or aqueous
solution, the spherical shell accounting for the solvent
excluded volume can be readily and reliably approximated by
the water accessible surface area of the cavity:
WASAc ¼ 4pðrc þ rwÞ2 ð6Þ
where rc is the radius of the cavity, the spherical region void
of all parts of the solvent molecules, and rw is the effective
radius of a water molecule, usually equal to 1.4 A.13
In addition, as first recognized by Lum et al.,15 it is possi-
ble to normalize the DGc magnitude for WASAc and to
obtain a quantity, having the dimensions of surface tension,
that can be used to estimate the hydrophobic interaction
contribution from the knowledge of WASA buried upon
association. For instance, for the dimerization of b-LG, in
the assumption that the monomer structure does not change
upon dimer dissociation, as supported from structural
data,2,4 Goto and coworkers8 determined DWASA(dimeriza-
tion) 5 21200 A2 per dimer. According to the above consid-
erations, Eq. (5) can be re-written as:
dGðHIÞ ¼ ½DGcðwaterÞ=WASAc� � DWASAðdimerizationÞð7Þ
Since the WASA buried upon dimer formation is a nega-
tive quantity, while the quantity in square brackets is always
positive, the hydrophobic interaction contribution provides
a large and negative Gibbs energy change favorable to di-
merization. Note that: (a) it is not necessary to partition
DWASA(dimerization) according to the polar or nonpolar
nature of surface groups because the solvent excluded volume
effect is always operative; (b) a relation equivalent to Eq. (7)
was proposed and used by Chothia,16,17 in a heuristic manner,
to estimate the hydrophobic interaction contribution to protein
folding and protein-protein association. For a further deepening
on Eq. (7), see Appendix A.
To estimate the effect of salts on the strength of pairwise
hydrophobic interaction, it is necessary to calculate DGc also
in aqueous salt solutions, and to extend the validity of Eq.
(7) to write:
DdGðHIÞ ¼ f½DGcðsaltÞ � DGcðwaterÞ�=WASAcg3 DWASAðdimerizationÞ ð8Þ
This relationship, notwithstanding the simplifying
approximations involved in its derivation, is reliable from
the physico-chemical point of view, and is the cornerstone of
the present study.
RESULTSThe DGc quantity has been calculated in both water and
aqueous salt solutions by means of the analytical expressions
provided by scaled particle theory, SPT, for pure hard-sphere
fluids and hard-sphere fluid mixtures,18–21 neglecting the
pressure-volume term due to its smallness over the consid-
ered cavity size range when P 5 1 atm. To perform calcula-
tions, the experimental density of water and aqueous salt so-
lutions, at 258C and 1 atm, has been used; specifically, q 5
997 g L21 for water,22 1037 g L21 for 1M NaCl,23 999 g L21
for 25 mM NaClO4,24 and 1023 g L21 for 1M GuHCl.25 For
the effective hard-sphere diameter of water molecules, I have
used r(H2O) 5 2.8 A, the customary value,13,21 close to the
location of the first peak in the oxygen-oxygen radial distri-
bution function of liquid water at room temperature.26 For
the ions, the following effective hard-sphere diameters have
been used: r(Na1) 5 2.02 A, r(GuH1) 5 4.6 A or 5.0 A,
r(Cl2) 5 3.62 A, and r(ClO42) 5 4.8 A. These diameter
1184 Graziano
Biopolymers
values, except the two for the guanidinium ion, are in line
with the location of the first peak in the respective ion-oxy-
gen radial distribution functions.27,28 For the GuH1 ion, due
to its planar structure, there is not a clear-cut way to deter-
mine an effective hard-sphere diameter,29 and so I have
selected two r values that should define a reliable interval.
The obtained trends of DGc/WASAc as a function of the
cavity radius rc are reported for water (black line), 1M NaCl
(blue line) and 1M GuHCl with r(GuH1) 5 5.0 A (red line)
in Figure 1. The trend for 25 mM NaClO4 is not shown
because it is practically identical to that of water, while that
for 1M GuHCl with r(GuH1) 5 4.6 A is close to that for 1M
NaCl. All such trends possess a similar shape: (a) for small rc
values, the DGc/WASAc functions increase linearly with cav-
ity radius; (b) for larger rc values, the DGc/WASAc functions
are practically independent of cavity radius, reaching limit-
ing-plateau values. This dependence, first pointed out by
Lum et al.,15 has been confirmed by the results of computer
simulations using reliable water models30,31 (note, however,
that no-one of the five most popular and reliable water mod-
els, SPC, SPC/E, TIP3P, TIP4P and TIP5P, is able to exactly
reproduce the experimental temperature dependence of
water density32), and by the application of SPT, in both the
original version33 and the revised one.34 The finding that
DGc in water and aqueous salt solutions is directly propor-
tional to WASAc for sufficiently large cavity radii lends
support to the validity of Eqs. (7) and (8).
In addition, the limiting-plateau values in 1M NaCl and 1M
GuHCl are larger than those in water as shown in Figure 1,
whereas the limiting-plateau value in 25 mM NaClO4 is practi-
cally identical to that in water. Specifically, for rc 5 50 A
(i.e., the largest cavity radius considered in this study), DGc/
WASAc(in J mol21 A22) 5 348 in both water and 25 mM
NaClO4, 367 in 1M NaCl, and 364 or 376 in 1M GuHCl, using
r(GuH1) 5 4.6 A or 5.0 A, respectively. These numbers indicate
that it is more costly to create a cavity of a given size in 1M NaCl
or 1M GuHCl than in water or 25 mM NaClO4. This is largely a
consequence of the volume packing density of these aqueous so-
lutions.21 The volume packing density, n3 5 (p/6) �Sqi � ri3,
where qi is the number density, in molecules per A3, of the spe-
cies i and ri is the corresponding hard-sphere diameter, is the ra-
tio of the physical volume of a mole of liquid particles over the
molar volume of the liquid itself. In other words, n3 represent
the fraction of the molar volume that is physically occupied by
liquid particles. On increasing n3, the void volume in the liquid
decreases, the probability of finding molecular-sized cavities
decreases, and so the DGc magnitude increases.21 In fact, at 258Cand 1 atm, n3 5 0.3830 in water, 0.3835 in 25 mM NaClO4,
0.3934 in 1M NaCl, and 0.4019 or 0.4106 in 1M GuHCl, using
r(GuH1) 5 4.6 A or 5.0 A, respectively.
Actually, this explanation is not entirely correct, as
emphasized by the fact that the limiting-plateau value in 1M
NaCl is larger than that in 1M GuHCl with r(GuH1) 5 4.6
A, even though the latter solution has the larger n3 number.
A complete analysis has to take into account not only the
total fraction of void volume in a liquid, but also the size of
the liquid particles, because the diameters of the latter deter-
mine the average size of the pieces in which the total void
volume is partitioned.21,35 Keeping n3 fixed, the DGc magni-
tude increases on decreasing the diameters of liquid particles.
Indeed, even though water has the smallest volume packing
density of all the other pure liquids, it shows the largest DGc
values due to the small size of its molecules.35–37
What is more important for the present study is that the
limiting-plateau values of DGc/WASAc, when inserted in Eq.
(8), allow a quantitative estimation of the change in the
strength of hydrophobic interaction caused by the presence
of salts for the dimerization of b-LG. More correctly, as
emphasized by the curves in Figure 1, for cavities with rc �20 A or larger, the difference between the DGc/WASAc func-
tions (in J mol21 A22) remains practically constant: 19
between 1M NaCl and water, 16 or 28 between 1M GuHCl
and water, using r(GuH1) 5 4.6 A or 5.0 A, respectively,
and zero between 25 mM NaClO4 and water. Using DWASA
(dimerization) 5 21200 A2, the obtained DdG(HI) values
are: zero in 25 mM NaClO4, 222.8 kJ mol21 in 1 M NaCl,
219.2 or 233.6 kJ mol21 in 1M GuHCl, using r(GuH1) 5
4.6 A or 5.0 A, respectively. The extra hydrophobic interac-
tion contribution due to salts is large negative in the case of
1M NaCl and 1M GuHCl, but it does not exist in the case of
25 mM NaClO4. The increase in the strength of hydrophobic
FIGURE 1 Plot of DGc/WASAc as a function of the cavity radius
rc for water (black line), 1M NaCl (blue line), and 1M GuHCl with
r(GuH1) 5 5.0 A (red line). SPT calculations were performed
using the experimental density of water and aqueous salt solutions
at 258C and 1 atm; see text for further details.
Dimerization of Bovine b-Lactoglobulin 1185
Biopolymers
interaction in 1M NaCl determined by means of simple SPT
calculations agrees with the results of detailed molecular dy-
namics (MD) simulations by Garde and coworkers.38
According to the above DdG(HI) numbers, the b-LG dimer
formation would be less favored in 25 mM NaClO4 than in
1M NaCl or 1M GuHCl, in complete contrast with experi-
mental data.8 Because Eq. (8) is physically sound, the correct
rank order of the three salt solutions in promoting the b-LG
dimerization has to be caused by other factors.
To gain perspective, it is useful to calculate the Gibbs
energy change associated with b-LG dimer formation by
means of the fundamental thermodynamic relation DGD 5
2RT � lnKD. Using the KD values reported in the Introduc-
tion section, one obtains that, at 208C and pH 3.0, DGD (in
kJ mol21) 5 229.5 in 1M NaCl, 232.4 in 1M GuHCl, and
235.5 in 25 mM NaClO4. Moreover, by assuming that in
water, at 208C and pH 3.0, KD 5 1 3 1023M21 (i.e., the
molar concentration of dimer is a very small fraction of the
total protein concentration in solution), it would result DGD
5 16.8 kJ mol21. From the thermodynamic point of view,
the salt effect, at 208C and pH 3.0, could be quantified in
DDGD (water ) salt) 5 246.3 kJ mol21 in 1M NaCl, 249.2
kJ mol21 in 1M GuHCl, and 252.3 kJ mol21 in 25 mM
NaClO4. By comparing the latter values with the above
DdG(HI) estimates, it is clear that the other factors promot-
ing b-LG dimerization at pH 3.0 in the presence of salts pro-
vide the major contribution to the Gibbs energy balance,
especially in the case of 25 mM NaClO4.
In this respect the anion binding mechanism, claimed by
Goto and coworkers,8 is surely operative at acid pH, and its
effectiveness proves to be inversely proportional to the anion
charge density. Since the ClO42 ion is larger than the Cl2 ion, it
has a smaller charge density and exerts a weaker attraction on
surrounding water molecules. Therefore, ClO42 ions, being
weakly hydrated, are much more prone than Cl2 ions to bind
on the positively charged surface of b-LG. Experimental data,
coupled to the present DdG(HI) estimates, especially that for
25 mM NaClO4, point out that an efficient screening of posi-
tive charges due to anion binding on the surface of b-LG
monomers is the major factor to promote dimerization. It is
worth noting, however, that the approach leading to Eq. (8)
works qualitatively well in the case of 1M NaCl and 1M
GuHCl, and is also able to rationalize the experimental datum
that b-LG dimerization induced by NaCl at pH 3.0 is an
exothermic process8 (for more details, see Appendix B).
DISCUSSIONA first point is related to the complete neglect of water struc-
ture reorganization, or better water-water H-bond reorganiza-
tion in the theoretical relationships devised to estimate the
hydrophobic interaction contribution. Apart from strictly sta-
tistical mechanical considerations, this is a simple consequence
of the finding that the switching off of H-bonds in detailed
water models has negligible effects on the calculated potential
of mean force between two nonpolar solutes.39,40 The funda-
mental role is played by the solvent excluded volume effect
because an almost complete enthalpy-entropy compensation
holds for the water-water H-bond reorganization.41,42
The second point is concerned with the claim by several
authors15,30,31,34 that the limiting-plateau value of DGc/ASAc
has to correspond to the experimental air-liquid surface ten-
sion of the considered liquid, because the creation of a suffi-
ciently large molecular cavity should be assimilated to the
creation of an air-liquid interface. Calculations with the orig-
inal version of SPT, using customary values for the effective
hard-sphere diameters of several liquids, did not find any
correlation between the obtained limiting-plateau values and
the experimental air-liquid surface tension data.33 In the
present case, at 258C and 1 atm, the SPT-calculated DGc/
WASAc limiting-plateau estimates, 348 and 367 J mol21 A22
in water and 1M NaCl, respectively, are markedly smaller
than the experimental air-liquid surface tension values, 433
and 443 in J mol21 A22, respectively. It is worth noting that
the SPT results are in line with those of detailed free energy
perturbation calculations based on MD simulations of water
and several organic liquids.43,44 It appears that the creation
of a microscopic (i.e., molecular-sized) cavity in a liquid is
not strictly related to the creation of a macroscopic air-liquid
interface because the former process is ruled by the solvent
excluded volume effect that is not operative in the latter. This
view seems to be also supported by experimental measure-
ments on superhydrophobic surfaces.45
A third point concerns the finding that GuHCl at 1M con-
centration increases the strength of hydrophobic interaction
notwithstanding its well-known denaturing action on the
native structure of globular proteins. This SPT result, already
pointed out in a previous study,46 is in complete agreement
with the conclusion emerged from the MD simulations per-
formed by Thirumalai and coworkers.47 The latter were able
to show that the denaturing action of GuHCl is due to the
ability of the guanidinium ion to directly bind on the protein
surface and to destroy both charge-charge interactions and
H-bonds.47 This direct interaction mechanism is entirely
compatible with the finding that the magnitude of the work
of cavity creation is larger in aqueous GuHCl solutions than
in water. Similarly, the recent result of MD simulations48 that
GuHCl inhibits the onset of dewetting between nanosepa-
rated hydrophobic plates should not be considered as a
demonstration that GuHCl decreases the strength of hydro-
1186 Graziano
Biopolymers
phobic interaction by reducing the Gibbs energy cost of cav-
ity creation. Such a finding is a further indication that
GuHCl directly interacts with hydrophobic surfaces, due to
its planar and weakly hydrated structure and its delocalized pelectrons, thus favoring solvent-separated configurations of
the two plates.
In conclusion, the devised analysis of the hydrophobic
effect role in the salt-induced dimerization of b-LG at pH 3.0
indicates that: (a) the hydrophobic interaction contribution
is strengthened in 1M NaCl and 1M GuHCl with respect to
pure water, but not in 25 mM NaClO4; (b) anion binding on
the positively charged surface of protein molecules, by effec-
tively shielding repulsive electrostatic interactions, is the
major factor for the salt-induced dimerization.
APPENDIX A
On the Validity of Eq. (7)
It would be important to show that the magnitude of DGc/
WASAc does not depend on the cavity shape to support the
general validity of Eq. (7). I have performed a set of DGc cal-
culations, by means of the appropriate SPT relationship,49 for
spherocylindrical cavities in a hard-sphere fluid (i.e., the lat-
ter has the experimental density of water at 258C and 1 atm,
and the sphere diameter is 2.80 A). By keeping fixed the cav-
ity volume, it resulted that: (1) WASAc(spherocylinder) 5
4p(a 1 rw)2 1 2pl(a 1 rw) increases markedly on increasing
the cylindrical length-to-radius ratio, l/a, of the spherocylin-
der; (2) DGc increases with the l/a ratio, but to a lesser extent
than WASAc; (3) thus, the DGc/WASAc ratio decreases on
increasing the l/a ratio, and reaches the maximum value in
the case of a spherical cavity. Therefore, it is not true that the
DGc/WASAc ratio is independent of the cavity shape.
However, I have verified that it changes to a little extent
passing from a sphere to spherocylinders with a l/a ratio up
to about 40. Specifically, for a cavity volume of 30427 A3,
corresponding to a sphere of 19.366 A radius, DGc/WASAc(in
J mol21 A22) 5 327 for the sphere, 323 for the spherocylin-
der with a 5 10 A and l 5 83.5 A, 309 for the spherocylinder
with a 5 6 A and l 5 261 A, and 291 for the spherocylinder
with a 5 4 A and l 5 600 A. The sphere is very different in
shape from the spherocylinder with l/a 5 261/6 5 43.5, but
the change in DGc/WASAc is small, amounting to 5.5% of the
value for the spherical cavity. This analysis confirms that:
(a) DGc depends on the solvent excluded volume of the
cavity that is reliably approximated by WASAc; (b) the value
of the DGc/WASAc ratio obtained for spherical cavities can
be considered to hold also for cavities that are very different
in shape from a sphere. Clearly, the DGc dependence on
WASAc should be a fundamental ingredient for the collapse
of polypeptide chains in the folding process.
APPENDIX B
On the Exothermicity of b-LG Dimerization
Induced by Salts
Goto and coworkers,8 by determining the dimerization con-
stant at different temperatures, found that the b-LG dimer-
ization induced by salts at pH 3.0 is exothermic. I would like
to show that the process of bringing together the two cavities
hosting the two b-LG molecules is exothermic in 1M NaCl.
Starting from Eq. (8), the enthalpy change due to pairwise
hydrophobic interaction is given by:
DdHðHIÞ ¼ f½DH cðsaltÞ�DH cðwaterÞ�=WASAcg3 DWASAðdimerizationÞ ðB1Þ
According to SPT, DHc is proportional to the thermal
expansion coefficient a of the solvent, and, at 258C and 1
atm, a (in K21 1023) 5 0.257 for water, and 0.325 for 1M
NaCl.21 Calculations indicate that the [DHc(salt) 2
DHc(water)]/WASAc quantity is practically constant, equal to
22 J mol21 A22, for cavities with rc � 20 A or larger. There-
fore, inserting the latter value in Eq. (B1), it results DdH(HI)
5 226.4 kJ mol21, in qualitative agreement with the experi-
mental datum DHD 5 250.4 kJ mol21.
In this respect, it is important to note that21,33: (a) DHc
does not account for the solvent excluded volume effect, but
solely for the structural reorganization of solvent molecules
upon cavity creation; (b) the DHc contribution is perfectly
compensated for by a corresponding entropy term so that
DGc is always purely entropic. At 258C and 1 atm, DHc is a
positive quantity (i.e., cavity creation is endothermic), mark-
edly smaller than DGc in both water and 1M NaCl, and
DHc(1M NaCl) [ DHc(H2O), indicating that the structural
reorganization upon cavity creation occurs to a greater extent
in 1M NaCl than in water.21 Clearly, bringing together two
cavities and so reducing the total WASAc leads to an energy
gain that is larger in 1M NaCl than in water.
REFERENCES1. Sawyer, L.; Kontopidis, G. Biochim Biophys Acta 2000, 1482,
136–148.
2. Brownlow, S.; Cabral, J. H. M.; Cooper, R.; Flower, D. R.;
Yewdall, S. J.; Polikarpov, I.; North, A. C. T.; Sawyer, L. Structure
1997, 5, 481–495.
3. Kontopidis, G.; Holt, C.; Sawyer, L. J Mol Biol 2002, 318, 1043–
1055.
Dimerization of Bovine b-Lactoglobulin 1187
Biopolymers
4. Uhrinova, S.; Smith, M. H.; Jameson, G. B.; Uhrin, D.; Sawyer,
L.; Barlow, P. N. Biochemistry 2000, 39, 3565–3574.
5. Sakai, K.; Sakurai, K.; Sakai, M.; Hoshino, M.; Goto, Y. Protein
Sci 2000, 9, 1719–1729.
6. Burova, T. V.; Choiset, Y.; Tran, V.; Haertle, T. Protein Eng 1998,
11, 1065–1073.
7. Joss, L. A.; Ralston, G. B. Anal Biochem 1996, 236, 20–26.
8. Sakurai, K.; Oobatake, M.; Goto, Y. Protein Sci 2001, 10, 2325–
2335.
9. Ben-Naim, A. Hydrophobic Interactions; Plenum Press: New
York, 1980.
10. Ben-Naim, A. Solvation Thermodynamics; Plenum Press: New
York, 1987.
11. Lee, B. Biopolymers 1991, 31, 993–1008.
12. Graziano, G. Chem Phys Lett 2006, 429, 114–118.
13. Lee, B.; Richards, F. M. J Mol Biol 1971, 55, 379–400.
14. Graziano, G. Chem Phys Lett 2007, 440, 221–223.
15. Lum, K.; Chandler, D.; Weeks, J. D. J Phys Chem B 1999, 103,
4570–4577.
16. Chothia, C. Nature 1975, 254, 304–308.
17. Chothia, C.; Janin, J. Nature 1975, 256, 705–708.
18. Reiss, H.; Frisch, H. L.; Lebowitz, J. L. J Chem Phys 1959, 31,
369–380.
19. Lebowitz, J. L.; Helfand, E.; Praestgaard, E. J Chem Phys 1965,
43, 774–779.
20. Pierotti, R. A. Chem Rev 1976, 76, 717–726.
21. Graziano, G. J Chem Phys 2008, 129, 084506.
22. Kell, G. S. J Chem Eng Data 1975, 20, 97–105.
23. Rogers, P. S. Z.; Pitzer, K. S. J Phys Chem Ref Data 1982, 11, 15–
81.
24. Abdulagatov, I. M.; Azizov, N. D. High Temp High Press 2003/
2004, 35–36, 477–498.
25. Kahawara, K.; Tanford, C. J Biol Chem 1966, 241, 3228–3232.
26. Hura, G.; Head-Gordon, T. Chem Rev 2002, 102, 2651–2670.
27. Marcus, Y. Chem Rev 1988, 88, 1475–1498.
28. Mancinelli, R.; Botti, A.; Bruni, F.; Ricci, M. A.; Soper, A. K.
J Phys Chem B 2007, 111, 13570–13577.
29. Mason, P. E.; Neilson, G. W.; Enderby, J. E.; Saboungi, M. L.;
Dempsey, C. E.; MacKerell, A. D.; Brady, J. W. J Am Chem Soc
2004, 126, 11462–11470.
30. Chandler, D. Nature 2005, 437, 640–647.
31. Rajamani, S.; Truskett, T. M.; Garde, S. Proc Natl Acad Sci USA
2005, 102, 9475–9480.
32. Paschek, D. J Chem Phys 2004, 120, 6674–6690.
33. Graziano, G. J Phys Chem, B. 2006, 110, 11421–11426.
34. Ashbaugh, H. S.; Pratt, L. R. Rev Mod Phys 2006, 78, 159–178.
35. Graziano, G. Chem Phys Lett 2008, 452, 259–263.
36. Lee, B. Biopolymers 1985, 24, 813–823.
37. Graziano, G. J Phys Chem B 106: 7713–7716, 2002.
38. Ghosh, T.; Kalra, A.; Garde, S. J Phys Chem B 2005, 109, 642–
651.
39. Rank, J. A.; Baker, D. Biophys Chem 1998, 71, 199–204.
40. Southall, N. T.; Dill, K. A. Biophys Chem 2002, 101–102, 295–
307.
41. Lee, B.; Graziano, G. J Am Chem Soc 1996, 118, 5163–5168.
42. Graziano, G.; Lee, B. J Phys Chem B 2001, 105, 10367–10372.
43. Hofinger, S.; Zerbetto, F. Chem Soc Rev 2005, 34, 1012–1020.
44. Mahajan, R.; Kranzmuller, D.; Volkert, J.; Hansmann, U. H. E.;
Hofinger, S. Phys Chem Chem Phys 2006, 8, 5515–5521.
45. Singh, S.; Houston, J.; van Swol, F.; Brinkler, C. J. Nature 2006,
442, 526.
46. Graziano, G. Can J Chem 2002, 80, 388–400.
47. O’Brien, E. P.; Dima, R. I.; Brooks, B.; Thirumalai, D. J Am
Chem Soc 2007, 129, 7346–7353.
48. England, J. L.; Pande, V. S.; Haran, G. J Am Chem Soc 2008,
130, 11854–11855.
49. Benzi, C.; Cossi, M.; Improta, R.; Barone, V. J Comput Chem
2005, 26, 1096–1105.
Reviewing Editor: Laurence Nafie
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